Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60349 | Canola | nucleus | 42.89 | 68.85 |
| CDY04566 | Canola | nucleus | 63.91 | 68.39 |
| CDY15748 | Canola | nucleus | 63.29 | 66.93 |
| Bra011947.1-P | Field mustard | nucleus | 64.77 | 66.75 |
| CDY60348 | Canola | golgi, vacuole | 39.18 | 57.85 |
| VIT_06s0004g02940.t01 | Wine grape | nucleus | 54.26 | 52.08 |
| KRH29928 | Soybean | nucleus | 53.89 | 48.99 |
| KRH24877 | Soybean | nucleus | 53.52 | 48.76 |
| EES10334 | Sorghum | nucleus | 49.94 | 46.87 |
| Zm00001d004541_P009 | Maize | nucleus | 49.07 | 46.54 |
| Solyc11g069340.1.1 | Tomato | nucleus | 52.78 | 46.36 |
| Os04t0105000-01 | Rice | nucleus | 27.07 | 44.97 |
| TraesCS2B01G051800.1 | Wheat | nucleus | 49.69 | 44.92 |
| Zm00001d024928_P003 | Maize | nucleus | 47.47 | 43.89 |
| TraesCS2A01G039200.1 | Wheat | nucleus | 49.69 | 43.7 |
| TraesCS2D01G037700.2 | Wheat | nucleus | 49.69 | 43.7 |
| HORVU2Hr1G005690.1 | Barley | nucleus | 49.32 | 43.65 |
| GSMUA_Achr5P18510_001 | Banana | nucleus | 35.35 | 43.47 |
| KRH54851 | Soybean | cytosol | 6.06 | 38.28 |
| AT3G21300.1 | Thale cress | mitochondrion | 16.56 | 24.19 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.70.330 | Gene3D:3.40.1350.30 | Gene3D:4.10.1000.10 | EntrezGene:817393 | ProteinID:AAD20681.1 |
| ProteinID:AEC08124.1 | ArrayExpress:AT2G28450 | EnsemblPlantsGene:AT2G28450 | RefSeq:AT2G28450 | TAIR:AT2G28450 | RefSeq:AT2G28450-TAIR-G |
| EnsemblPlants:AT2G28450.1 | TAIR:AT2G28450.1 | EMBL:AY128289 | Unigene:At.44990 | EMBL:BT002293 | ncoils:Coil |
| GO:GO:0001510 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008173 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032259 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR010280 |
| InterPro:IPR012677 | InterPro:MeTrfase_TrmA_AS | InterPro:Methyltranfer_dom | RefSeq:NP_180412.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 |
| PFAM:PF05958 | PFAM:PF13847 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | ScanProsite:PS01230 | PFscan:PS50103 | PFscan:PS51687 | PANTHER:PTHR11061 | PANTHER:PTHR11061:SF24 |
| UniProt:Q8L7S3 | InterPro:RBD_domain_sf | InterPro:SAM-dependent_MTases | SMART:SM00356 | SUPFAM:SSF53335 | SUPFAM:SSF54928 |
| SUPFAM:SSF90229 | InterPro:U5_MeTrfase_fam | UniParc:UPI00000ABF59 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
Coordinates
chr2:-:12162051..12165929
Molecular Weight (calculated)
89027.3 Da
IEP (calculated)
5.169
GRAVY (calculated)
-0.448
Length
809 amino acids
Sequence
(BLAST)
(BLAST)
001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.