Factsheet for Zm00001d004541_P009

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10334	Sorghum	nucleus	92.61	91.65
Zm00001d024928_P003	Maize	nucleus	90.86	88.57
Os04t0105000-01	Rice	nucleus	38.1	66.74
TraesCS2B01G051800.1	Wheat	nucleus	67.41	64.25
HORVU2Hr1G005690.1	Barley	nucleus	67.88	63.35
TraesCS2D01G037700.2	Wheat	nucleus	67.17	62.28
TraesCS2A01G039200.1	Wheat	nucleus	67.17	62.28
CDY60349	Canola	nucleus	32.59	55.16
CDY04566	Canola	nucleus	47.83	53.97
CDY15748	Canola	nucleus	48.3	53.86
VIT_06s0004g02940.t01	Wine grape	nucleus	51.58	52.19
Bra011947.1-P	Field mustard	nucleus	47.6	51.72
GSMUA_Achr5P18510_001	Banana	nucleus	37.98	49.24
AT2G28450.1	Thale cress	nucleus	46.54	49.07
KRH24877	Soybean	nucleus	49.59	47.64
KRH29928	Soybean	nucleus	49.36	47.3
CDY60348	Canola	golgi, vacuole	30.36	47.26
Solyc11g069340.1.1	Tomato	nucleus	49.12	45.49
KRH54851	Soybean	cytosol	5.39	35.94
Zm00001d039477_P001	Maize	plastid	16.65	25.45

Protein Annotations

EntrezGene:103646885	MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.50.150	Gene3D:4.10.1000.10	UniProt:A0A060D587
ncoils:Coil	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR010280
InterPro:IPR012677	EMBL:KJ726983	InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM19090.1
PFAM:PF00642	PFAM:PF05958	PFAM:PF13847	ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687
PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf	InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335
SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam	UniParc:UPI000221DE12	EnsemblPlantsGene:Zm00001d004541	EnsemblPlants:Zm00001d004541_P009
EnsemblPlants:Zm00001d004541_T009	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

C3H-transcription factor 310Zinc finger CCCH domain-containing protein 24

Coordinates

chr2:-:117112144..117121714

Molecular Weight (calculated)

92590.0 Da

IEP (calculated)

5.417

GRAVY (calculated)

-0.485

Length

853 amino acids

Sequence
(BLAST)

001: MEDVLTPPPQ PELAGEKRKR EESSLDASIE DAPSAPASTC SAEDAAGSDV ARHPMWKTSL CSFFRRRGAG AEGCSHGDSC RYAHTEEELR PRPDGTWDPT
101: SDRAKELRKV AAEAQEEAEE EVTVDEQSLD KCLVGLPRGW TADRLKSLLQ DQGISYATAK KKKGMTVGFV TFQSVEQLTN AVQVLKENPS DGKQIKIVDA
201: NRRSHQKAHA GAPVSNTGTA TENGSSPTTP AEETSVPESV SSSKKGARDA VTPLAHMTYI DQLEHKKQSM AQILKKLTRN ARKACPPTIP HPDWVFKSKE
301: IGGLPCKFEG ILESPVVNGY RNKCEFSVGY SLEGKKTVGF MLGNFREGVT AVEEPENCPN VSEISCKYAK MFQDFLQSSS FPLWSKIDNS GFWRQLTVRE
401: GRCPAEAVVS QNAESQISEV MLIVQVCSTS VDEALMKEEF DKLSAALVQG AATCSPPLPL TTIVVQDHKG ISNAAPTDCP LIPLLVPKGD KLDGTSEDKT
501: RIHDHISNLK FSISPTAFFQ VNTLAAERLY ALAGDWANLN SDTLLFDVCC GTGTIGLTLA QRVGMVVGIE MNESAVSDAH RNALINGIKN CRFVCGKAED
601: VMGPLLTEYL GSPQQQAAAS KSNSEIDDTS KTEDMIGCAS YDGENIDSSK QRHDNAEGQQ PMDTSVDHPT CASEVDGMDV VDCNHDENNV ASGEQNCGEA
701: SLINGKPIET SSDNSLEQGK TCKDGSSSPN NNVLAANACQ FKNVVAIVDP PRVGLHPTVI KALRTHPRIR RLVYISCNPD SLVANGIELC TPTPEKQEKN
801: KGNRGWRSMS SAGLARQRTK SMPNSEPFIP KRAMAVDLFP HTPHCEMVML FER

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.