CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011947.1-P	Field mustard	nucleus	94.18	90.7
CDY15748	Canola	nucleus	89.55	88.5
CDY60349	Canola	nucleus	54.63	81.94
CDY60348	Canola	golgi, vacuole	49.74	68.61
AT2G28450.1	Thale cress	nucleus	68.39	63.91
VIT_06s0004g02940.t01	Wine grape	nucleus	58.73	52.67
KRH24877	Soybean	nucleus	59.92	51.01
KRH29928	Soybean	nucleus	59.39	50.45
EES10334	Sorghum	nucleus	55.29	48.49
Zm00001d004541_P009	Maize	nucleus	53.97	47.83
Solyc11g069340.1.1	Tomato	nucleus	57.01	46.8
Os04t0105000-01	Rice	nucleus	29.63	46.0
TraesCS2B01G051800.1	Wheat	nucleus	54.23	45.81
Zm00001d024928_P003	Maize	nucleus	52.51	45.37
HORVU2Hr1G005690.1	Barley	nucleus	54.23	44.86
TraesCS2A01G039200.1	Wheat	nucleus	53.84	44.24
TraesCS2D01G037700.2	Wheat	nucleus	53.84	44.24
GSMUA_Achr5P18510_001	Banana	nucleus	37.96	43.62
KRH54851	Soybean	cytosol	6.48	38.28
CDY56917	Canola	plastid	18.65	24.19
CDY51452	Canola	plastid	18.12	23.3
CDX88149	Canola	cytosol	2.25	13.71
CDY37612	Canola	cytosol	1.98	12.0

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	Gene3D:4.10.1000.10	GO:A0A078ETQ0
EnsemblPlants:CDY04566	ProteinID:CDY04566	ProteinID:CDY04566.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00118752001	InterPro:IPR000571
InterPro:IPR010280	InterPro:IPR012677	InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642
PFAM:PF05958	PFAM:PF13847	ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061
PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf	InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928
SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam	UniParc:UPI0004EEE8DA	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	:

Description

BnaA07g13920D

Coordinates

chrLK031955:-:787243..790896

Molecular Weight (calculated)

82995.4 Da

IEP (calculated)

5.959

GRAVY (calculated)

-0.432

Length

756 amino acids

Sequence
(BLAST)

001: MTSSSLDELP SAAETLTSQI PSDTAPIDPI PSSNDDVEAV GEKRKRDDDE KTTNLESSTP SPWFKTSLCS YFRRQGSCSH GAACKYAHGE NELLQKPDNT
101: WDPTSERGKK AKMMSDSAVK EEEEVGVHDL SLSKCLVHLP TKWQSDDLKT FLREQGVEYK FAKKRRGMMV GFLTFENAEQ LKNGVEILEG KNVNNKSLKI
201: ADVLPRTFDK NGAKNPAAKL KSAREAVTPL ADLSYADQLE QKKASIAQML KKLTRNARKA CPNGKSLPEW VLQSREIGGL SCKLEGIIES PLVNGYRNKC
301: EFSTGYSVEG KLTVGFMLGN FSAGVTAVEE AVNCPNISKL ACRYASIFQS FLEKSRLPVW NRFKSCGFWR QLTVREGSKP GVVSSDEDAD SRIAEVMLMV
401: QVCSTDTDEA EVATEFEEMA KAFAEGARAS SPPLPLTVLV VQDHVGISNV APPDCPLRLL PIPVSDNGTH QDQSTNVLTE ARIHDHINNL RFSISPTAFF
501: QVNTCAAEKL YSLAGDWADL GPDTLLFDVC CGTGTIGLTL AHRVGMVIGI EMNASAVSDA ERNAKINGIS NCKFICSKAC AEDVMSSLLT EYLDVSETEE
601: AKPPSDDLDK QNSSAEEISN SEVQNNEQKD SSSEPERSAK PQFKNVVAIV DPPRPGLHPD VIKALRTHPR LKTLVYISCN PETLVANAIE LCTPSFEKTG
701: QENKGYRRQS RMGTAALARH RAKKMPASEP FKPVKAMAVD LFPHTDHCEM VMLLNR

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.