Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G037700.2 | Wheat | nucleus | 92.29 | 89.78 |
| HORVU2Hr1G005690.1 | Barley | nucleus | 88.16 | 86.32 |
| TraesCS2A01G039200.1 | Wheat | nucleus | 86.82 | 84.46 |
| Zm00001d004541_P009 | Maize | nucleus | 64.25 | 67.41 |
| EES10334 | Sorghum | nucleus | 64.69 | 67.17 |
| Os04t0105000-01 | Rice | nucleus | 34.86 | 64.07 |
| Zm00001d024928_P003 | Maize | nucleus | 61.9 | 63.31 |
| CDY60349 | Canola | nucleus | 30.73 | 54.56 |
| CDY04566 | Canola | nucleus | 45.81 | 54.23 |
| CDY15748 | Canola | nucleus | 45.59 | 53.33 |
| Bra011947.1-P | Field mustard | nucleus | 45.36 | 51.72 |
| VIT_06s0004g02940.t01 | Wine grape | nucleus | 48.6 | 51.6 |
| AT2G28450.1 | Thale cress | nucleus | 44.92 | 49.69 |
| GSMUA_Achr5P18510_001 | Banana | nucleus | 35.98 | 48.94 |
| KRH24877 | Soybean | nucleus | 47.6 | 47.97 |
| KRH29928 | Soybean | nucleus | 47.26 | 47.53 |
| Solyc11g069340.1.1 | Tomato | nucleus | 48.27 | 46.91 |
| CDY60348 | Canola | golgi, vacuole | 27.93 | 45.62 |
| KRH54851 | Soybean | cytosol | 5.7 | 39.84 |
| TraesCS3B01G124400.1 | Wheat | mitochondrion | 15.87 | 25.45 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.70.330 | Gene3D:4.10.1000.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008173 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR010280 |
| InterPro:IPR012677 | InterPro:MeTrfase_TrmA_AS | InterPro:Methyltranfer_dom | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PFAM:PF05958 |
| PFAM:PF13847 | ScanProsite:PS01230 | PFscan:PS50103 | PFscan:PS51687 | PANTHER:PTHR11061 | PANTHER:PTHR11061:SF24 |
| InterPro:RBD_domain_sf | InterPro:SAM-dependent_MTases | SMART:SM00356 | SUPFAM:SSF53335 | SUPFAM:SSF54928 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:TraesCS2B01G051800 | EnsemblPlants:TraesCS2B01G051800.1 | InterPro:U5_MeTrfase_fam | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd00590 |
| TIGR:cd02440 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:25278504..25285732
Molecular Weight (calculated)
97068.1 Da
IEP (calculated)
5.268
GRAVY (calculated)
-0.543
Length
895 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTTMPPPP PQQQAPELTG EKRKREEEPP KAASGENPAM EDPTQPPAPQ QEAEPAGEKR KREEESPEAA AGDAPPPASA APVADEAATA GGGGERHPMS
101: KTSLCSFFRR RGGGPDGCNH GEACRYAHTE EELRPRPDGT WDPTSDRAKK LRRVSEEEDG EEKARGRWGQ EEEVTFDEAS LDKCLLGLSR HWLTDRLKAF
201: LDDQGISYAV AKKKKGMTVG FVTFENVEQL KNAVEVLKEN RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSGDTA APADGTSGPE AAAASKRTVR
301: DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD VTLPDWISNA KQIGGLSCKL EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG
401: VTAVEEPVDC PNVSAMSCKY AMIFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV VAQDTQTQIS EVMIIIQVCS TGVDEVLMKD EFAKLSKTLV
501: QGAATCSPPL PLTTIVVQDH VGISNVAPAD CPLIPLLAPE VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER LYTLAGDWAN LNSDTLLFDV
601: CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI KNCRFVCGKA EDVMGSLLTE YLGSPQQHIA ASESNSEVNG TGKKEDIVGG AEDNGKSMES
701: LTEKNDTGEI NEDLDDGVSK ELEGGHEQCN EAVRNQNSEE ASSLVNEESV DAKAADCSEH TKTREEGSSI SKNDVLAATA CQFKNFVAIV DPPRAGLHPT
801: VIKVLRTHPR IRRLVYISCN PDTLVANAIE LCTPSTEHRE KNKGHRGWRN MSSAGLARQR TKSMPNSEPF VPKRAMAVDL FPHTSHCEMV MLFER
101: KTSLCSFFRR RGGGPDGCNH GEACRYAHTE EELRPRPDGT WDPTSDRAKK LRRVSEEEDG EEKARGRWGQ EEEVTFDEAS LDKCLLGLSR HWLTDRLKAF
201: LDDQGISYAV AKKKKGMTVG FVTFENVEQL KNAVEVLKEN RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSGDTA APADGTSGPE AAAASKRTVR
301: DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD VTLPDWISNA KQIGGLSCKL EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG
401: VTAVEEPVDC PNVSAMSCKY AMIFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV VAQDTQTQIS EVMIIIQVCS TGVDEVLMKD EFAKLSKTLV
501: QGAATCSPPL PLTTIVVQDH VGISNVAPAD CPLIPLLAPE VDQSEEGAVD KTRIHDHISN LRFSLSPTAF FQVNTLAAER LYTLAGDWAN LNSDTLLFDV
601: CCGTGTIGLT LAHRVGMVVG IEMNESAVVD AQRNALINGI KNCRFVCGKA EDVMGSLLTE YLGSPQQHIA ASESNSEVNG TGKKEDIVGG AEDNGKSMES
701: LTEKNDTGEI NEDLDDGVSK ELEGGHEQCN EAVRNQNSEE ASSLVNEESV DAKAADCSEH TKTREEGSSI SKNDVLAATA CQFKNFVAIV DPPRAGLHPT
801: VIKVLRTHPR IRRLVYISCN PDTLVANAIE LCTPSTEHRE KNKGHRGWRN MSSAGLARQR TKSMPNSEPF VPKRAMAVDL FPHTSHCEMV MLFER
001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
Arabidopsis Description
Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.