CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60349	Canola	nucleus	75.0	81.55
CDY04566	Canola	nucleus	68.61	49.74
CDY15748	Canola	nucleus	68.43	49.02
AT2G28450.1	Thale cress	nucleus	57.85	39.18
VIT_06s0004g02940.t01	Wine grape	nucleus	49.82	32.38
KRH24877	Soybean	nucleus	52.01	32.09
KRH29928	Soybean	nucleus	51.09	31.46
EES10334	Sorghum	nucleus	48.36	30.74
Zm00001d004541_P009	Maize	nucleus	47.26	30.36
Solyc11g069340.1.1	Tomato	nucleus	48.72	28.99
KRH54851	Soybean	cytosol	6.57	28.12
Zm00001d024928_P003	Maize	nucleus	44.89	28.11
TraesCS2B01G051800.1	Wheat	nucleus	45.62	27.93
Os04t0105000-01	Rice	nucleus	24.82	27.93
TraesCS2D01G037700.2	Wheat	nucleus	45.62	27.17
HORVU2Hr1G005690.1	Barley	nucleus	45.07	27.02
TraesCS2A01G039200.1	Wheat	nucleus	45.26	26.96
GSMUA_Achr5P18510_001	Banana	nucleus	30.47	25.38
CDY56917	Canola	plastid	20.07	18.87
CDY51452	Canola	plastid	19.53	18.2
CDX88149	Canola	cytosol	3.83	16.94
CDY37612	Canola	cytosol	3.47	15.2

Protein Annotations

MapMan:15.5.16	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	GO:A0A078J8Y8	UniProt:A0A078J8Y8	EnsemblPlants:CDY60348
ProteinID:CDY60348	ProteinID:CDY60348.1	ncoils:Coil	GO:GO:0001510	GO:GO:0003674	GO:GO:0003824
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00028511001	InterPro:IPR010280	PFscan:PS51257
PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	SignalP:SignalP-noTM
InterPro:U5_MeTrfase_fam	UniParc:UPI0004EF3E85	:	:	:	:

Description

BnaCnng36030DBnaCnng36030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8Y8]

Coordinates

chrLK033872:-:816..4377

Molecular Weight (calculated)

60916.2 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.226

Length

548 amino acids

Sequence
(BLAST)

001: MRLHCLLSKS LALWTMTFLL SCNSCGTCVH LYPTTIPHNI LILTGDGDFN KDIQNLEGDG HNVMVVHSRE SISERFREDR QIRTFLGLER EADKTAKQRR
101: REWFNEKKAA RKYKSAREAL SPLADLSYAD QLEQKKASIM QKLEKLTGNE RKACPNGKSL PELVLQSREI GGLSCKLEGI IESPLTNGYR NKCEFSTGYS
201: GEWKLTVGVV LGTDSAGVTV VEEAVNCPSI SKLACQYASI FRSFLEKSRL PVWNMSKSCG FWRQLTVREG SKPGVFSNDE DADSRIAEVM LMVQVCTRDT
301: NEAVVATEFE ELAKAFAEGA RASSPPLPLT VLVVQDHVGI SNFAQPDCPL RLLPIQMSDN GTHHDQPTNV LTEALIHDHI NNLRFSISPT ALFRFNTGAA
401: EKLYSLAGDW SDLCPDTLLF DVYCGTGTIG LTLAHRVRMA EYVMSSLLKD EISNAIAIVD PGYPGLHPDV IEALRTHPGL KTLVYISLSP EKLVANAIEL
501: CRPSFEKTGQ ENKAKKMPAS EPFKPVKAMA VDLSPHTHYC EMVMLFNR

Best Arabidopsis Sequence Match ( AT2G28450.2 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRYISCNPE TLVANAIELC TPSFDEPDRG NKNYRGRKKI GIAALARHRA KSMPTSEAFR PVKAMAVDLF PHTDHCEMVM
801: LLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.