Factsheet for GSMUA_Achr5P18510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0105000-01	Rice	nucleus	34.19	46.2
KRH54851	Soybean	cytosol	7.45	38.28
VIT_06s0004g02940.t01	Wine grape	nucleus	48.94	38.2
Zm00001d004541_P009	Maize	nucleus	49.24	37.98
CDY04566	Canola	nucleus	43.62	37.96
CDY15748	Canola	nucleus	43.62	37.52
EES10334	Sorghum	nucleus	48.48	37.01
Bra011947.1-P	Field mustard	nucleus	43.01	36.05
TraesCS2B01G051800.1	Wheat	nucleus	48.94	35.98
Zm00001d024928_P003	Maize	nucleus	47.11	35.43
AT2G28450.1	Thale cress	nucleus	43.47	35.35
HORVU2Hr1G005690.1	Barley	nucleus	49.09	35.34
KRH24877	Soybean	nucleus	47.11	34.91
KRH29928	Soybean	nucleus	47.11	34.83
TraesCS2D01G037700.2	Wheat	nucleus	48.63	34.78
TraesCS2A01G039200.1	Wheat	nucleus	48.48	34.67
Solyc11g069340.1.1	Tomato	nucleus	46.2	33.01
CDY60349	Canola	nucleus	25.23	32.94
CDY60348	Canola	golgi, vacuole	25.38	30.47
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	16.57	18.11
GSMUA_Achr5P18520_001	Banana	cytosol	2.74	10.78

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.50.150	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G18510_001	EnsemblPlants:GSMUA_Achr5P18510_001	EnsemblPlants:GSMUA_Achr5T18510_001	InterPro:IPR000571
InterPro:IPR010280	InterPro:IPR012677	UniProt:M0SZN0	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642
PFAM:PF13847	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf
InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam
UniParc:UPI0002950062	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

Putative Zinc finger CCCH domain-containing protein 24 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18510_001]

Coordinates

chr5:+:19970850..19977741

Molecular Weight (calculated)

72576.5 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.412

Length

658 amino acids

Sequence
(BLAST)

001: MAAMEITAPP PSEENEVANR ESTAVVVSAG DDALEVGDGV DSSSAKRKRE EEEEEEEREV EGVEETKVSD AGDGKTRRDL LWKTSLCSFY RRQPGKAGCS
101: HGDACRYAHG EAELRIRPDN TWDPTSERAK KLLRASNNGD DAKAESSEAE DPTVDVTSLD KCLIGLPRKW ASDNLKSFLD GQGILYKTAK KKKGMTVGFV
201: CFEDSQQLES AIEVLNANST SGKQIKVVDA IRRSHEKKSE IPTSNQTKGQ LVDSEQCTDD PNTSTSTSLI EDDDAVEKDT SVFEGLVSKT TRTARDVVAP
301: LADLPYGDQL EKKKKTLMQT LKRLTRNARK ACPASVALPE WITKSRDIGG LPCKFEGILE SPLANGYRNK CEFSVGVSLK GKPTVGFMVG NFREGITAIE
401: EPINCPNVSR ISSEYALIFQ EFLQSSVLPI WNRLENKGFW RQFTVREGRK TSQTSSTENA ENSVVEVMLI IQVFNFTSYW ITKDSIKLYN ALVPFFGSAS
501: WSLNVAPCTH LNTFFVTQSR IHDYISNLRF SISPTAFFQV NTLAAERLYS LAGNWADLNP ETLLFDICCG TGTIGLTLAH RVGMVVGIEM NASAVSDAQR
601: NAMINDIKNC RFVCGKAEDV VGALLKEYLD VPKQHGIISE VSSMSHTGNY DVMNDMVN

Best Arabidopsis Sequence Match ( AT2G28450.2 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRYISCNPE TLVANAIELC TPSFDEPDRG NKNYRGRKKI GIAALARHRA KSMPTSEAFR PVKAMAVDLF PHTDHCEMVM
801: LLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.