Factsheet for Zm00001d024928_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004541_P009	Maize	nucleus	88.57	90.86
EES10334	Sorghum	nucleus	86.86	88.17
Os04t0105000-01	Rice	nucleus	36.11	64.89
TraesCS2B01G051800.1	Wheat	nucleus	63.31	61.9
HORVU2Hr1G005690.1	Barley	nucleus	63.66	60.94
TraesCS2A01G039200.1	Wheat	nucleus	62.97	59.89
TraesCS2D01G037700.2	Wheat	nucleus	62.63	59.57
CDY04566	Canola	nucleus	45.37	52.51
CDY60349	Canola	nucleus	30.06	52.18
CDY15748	Canola	nucleus	45.26	51.76
VIT_06s0004g02940.t01	Wine grape	nucleus	48.69	50.53
Bra011947.1-P	Field mustard	nucleus	44.91	50.06
AT2G28450.1	Thale cress	nucleus	43.89	47.47
GSMUA_Achr5P18510_001	Banana	nucleus	35.43	47.11
KRH24877	Soybean	nucleus	46.4	45.72
KRH29928	Soybean	nucleus	46.06	45.28
CDY60348	Canola	golgi, vacuole	28.11	44.89
Solyc11g069340.1.1	Tomato	nucleus	46.29	43.97
KRH54851	Soybean	cytosol	5.49	37.5
Zm00001d039477_P001	Maize	plastid	15.43	24.19

Protein Annotations

EntrezGene:103641439	MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.50.150	Gene3D:4.10.1000.10	UniProt:A0A1D6J2R7
ProteinID:AQK42334.1	ncoils:Coil	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR010280	InterPro:IPR012677	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PFAM:PF13847
PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf	InterPro:SAM-dependent_MTases
SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam	UniParc:UPI0008425297
EnsemblPlantsGene:Zm00001d024928	EnsemblPlants:Zm00001d024928_P003	EnsemblPlants:Zm00001d024928_T003	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

Zinc finger CCCH domain-containing protein 24

Coordinates

chr10:-:95451163..95473347

Molecular Weight (calculated)

94756.5 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.423

Length

875 amino acids

Sequence
(BLAST)

001: MEDVLTPPPQ PELVGEKRKR DETSLDASIE DAPAAPASTG GAEDAAGSDV ARHPMWKTSL CSYFRRRGAG AEECSHGESC RYAHTEEELR PRPDGTWDPT
101: SDRAKKLRKV AAEAQEEAEE EVTVDEQSLE KCLVGLPMGW TADRLKPFLQ DQGISYAIAK KKKGMTVGFV TFQSVEQLTN AVQILKKNPS GGKEIKIVDA
201: NRRSHQKAHD GALVSNTGTT TENGSSPTTP AEETSVLESV SSSKKGARDA VTPLANMTYI DQLEHKNQSM AQILKKLTRN ARKACPPAIP HPDWVFKSKE
301: IGGLPCKFEG ILESPVVNGY RNKCEFSVGY SLEGKKTVGF MLGNFREGVT AVEEPVNCPN VSEISCKYAQ MFQDFLQPSS FPLWSRIDNS GFWRQLTVRE
401: GRCPAEAVVS QNAESQISEV MLIVQVCSTG VDEALMKEEF DKLSAILIQG AATCSPPLPL TTIVVQDHKG ISNAAPTDCP LIPLLVPKGD QLDGTTEDKI
501: RIHDHISNLK FSLSPTAFFQ VNTLAAERLY TLAGDWANLN SDTLLFDVCC GTGTIGLTLA QHVGMVVGIE MNESAVSNAC RNALVNGIKN CRFVCGKAED
601: VMGPLLTEYL GSPQQQAAAS KSNSEIDDAS KNEDTIGCAS YDGENIDSSK QRNDNAEGQQ PMGASVDHPT CASEVDENNV ASGEQNCGEA SLVNDKPIET
701: ASDNSLEQGK ACKDGSSSPN NNVLAANACQ FKNVVAIVDS PRVGLRPTIQ SIFIGDQGIE DASTYSTSSI KFTRRICSEV FAAALLNCDR GSDVRYVSCN
801: PDSLVANAIE LCTPTSEKQE KNKGNRGWRS MSSAGLARQR TKSMPNSEPF IPKRAMAVDL FPHTPHCEMV MLFER

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.