Factsheet for Bra011947.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04566	Canola	nucleus	90.7	94.18
CDY15748	Canola	nucleus	85.1	87.32
AT2G28450.1	Thale cress	nucleus	66.75	64.77
VIT_06s0004g02940.t01	Wine grape	nucleus	56.31	52.43
KRH24877	Soybean	nucleus	58.34	51.58
KRH29928	Soybean	nucleus	57.96	51.12
EES10334	Sorghum	nucleus	52.48	47.8
Zm00001d004541_P009	Maize	nucleus	51.72	47.6
Solyc11g069340.1.1	Tomato	nucleus	54.78	46.69
TraesCS2B01G051800.1	Wheat	nucleus	51.72	45.36
Zm00001d024928_P003	Maize	nucleus	50.06	44.91
Os04t0105000-01	Rice	nucleus	27.77	44.76
HORVU2Hr1G005690.1	Barley	nucleus	51.85	44.53
TraesCS2A01G039200.1	Wheat	nucleus	51.59	44.02
TraesCS2D01G037700.2	Wheat	nucleus	51.59	44.02
GSMUA_Achr5P18510_001	Banana	nucleus	36.05	43.01
KRH54851	Soybean	cytosol	6.24	38.28
Bra031272.1-P	Field mustard	mitochondrion	17.07	24.06
Bra009808.1-P	Field mustard	cytosol	2.17	13.71
Bra019367.1-P	Field mustard	cytosol	1.91	12.0
Bra008455.1-P	Field mustard	cytosol	1.91	12.0

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:4.10.1000.10	EnsemblPlantsGene:Bra011947	EnsemblPlants:Bra011947.1	EnsemblPlants:Bra011947.1-P
ncoils:Coil	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR010280
InterPro:IPR012677	UniProt:M4D639	InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642
PFAM:PF05958	PFAM:PF13847	ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061
PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf	InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928
SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam	UniParc:UPI00025419C0	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

AT2G28450 (E=0.0) | zinc finger (CCCH-type) family protein

Coordinates

chrA07:-:11044232..11047837

Molecular Weight (calculated)

86092.0 Da

IEP (calculated)

5.220

GRAVY (calculated)

-0.446

Length

785 amino acids

Sequence
(BLAST)

001: MTSSSLDELP SAAETLTSQI PSDTAPIDPI PSSNDDVEAV GEKRKRDDDE KTTNLESSTP SPWFKTSLCS YFRRQGSCSH GAACKYAHGE NELLQKPDNT
101: WDPTSERGKK AKMMSDSAVK EEEEVGDVMF TEEMMDDNDG GGDGGVHDLS LSKCLVHLPT KWQSDDLKTF LREQGVEYKF AKKRRGMMVG FLTFENAEQL
201: KNGVEILEGK NVNNKSLKIA DVLPRTFDKN GAKNPAAKLK SAREAVTPLA DLSYADQLEQ KKASIAQMLK KLTRNARKAC PNGKSVPEWV LQSREIGGLS
301: CKLEGIIESP LVNGYRNKCE FSTGYSVEGK LTVGFMLGNF SAGVTAVEEA VNCPNISKLA CRYASIFQSF LEKSRLPVWN RFKSCGFWRQ LTVREGSKPG
401: VVSSDEDADS RIAEVMLMVQ VCSTDTDEAE VATEFEEMAK AFAEGARAST PPLPLTVLVV QDHVGISNVA PPDCPLRLLP IPVSDNGTHQ DQSTNVLTEA
501: RIHDHINNLR FSISPTAFFQ VNTCAAEKLY SLAGDWADLG PDTLLFDVCC GTGTIGLTLA HRVGMVIGIE MNASAVSDAE RNAKINGISN CKFICSKACA
601: EDVMSSLLTE YVDVSETEEA KPPSDDLDKQ NSSAEEMSNP EDVPPLNIQE AVQKTEQKDS SSEPERSTKP QFKNVVAIVD PPRPGLHPDV IKALRTHPRL
701: KTLVYISCNP ETLVANAIEL CTPSFEKTGQ ENKGYRRQSR MGTAALARHR AKKMPASEPF KPVKAMAVDL FPHTDHCEMV MLLNR

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.