CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0105000-01	Rice	nucleus	37.5	9.86
GSMUA_Achr5P18510_001	Banana	nucleus	38.28	7.45
CDY60349	Canola	nucleus	28.12	7.14
KRH29928	Soybean	nucleus	48.44	6.97
KRH24877	Soybean	nucleus	47.66	6.87
KRH09984	Soybean	mitochondrion	19.53	6.7
CDY60348	Canola	golgi, vacuole	28.12	6.57
VIT_06s0004g02940.t01	Wine grape	nucleus	42.97	6.52
CDY04566	Canola	nucleus	38.28	6.48
CDY15748	Canola	nucleus	38.28	6.41
Bra011947.1-P	Field mustard	nucleus	38.28	6.24
KRH23347	Soybean	nucleus	25.78	6.19
Solyc11g069340.1.1	Tomato	nucleus	43.75	6.08
AT2G28450.1	Thale cress	nucleus	38.28	6.06
TraesCS2B01G051800.1	Wheat	nucleus	39.84	5.7
TraesCS2D01G037700.2	Wheat	nucleus	39.84	5.54
Zm00001d024928_P003	Maize	nucleus	37.5	5.49
HORVU2Hr1G005690.1	Barley	nucleus	39.06	5.47
EES10334	Sorghum	nucleus	36.72	5.45
TraesCS2A01G039200.1	Wheat	nucleus	39.06	5.43
Zm00001d004541_P009	Maize	nucleus	35.94	5.39

Protein Annotations

EMBL:ACUP02003588	EnsemblPlants:KRH54851	EnsemblPlantsGene:GLYMA_06G213900	Gene3D:3.40.1350.30	GO:GO:0001510	GO:GO:0003674
GO:GO:0003824	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008173
GO:GO:0009987	GO:GO:0016740	InterPro:IPR010280	InterPro:U5_MeTrfase_fam	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24
ProteinID:KRH54851	ProteinID:KRH54851.1	UniParc:UPI0006EE0C0F	UniProt:A0A0R0JRY7	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:21808143..21814617

Molecular Weight (calculated)

14400.1 Da

IEP (calculated)

4.704

GRAVY (calculated)

-0.389

Length

128 amino acids

Sequence
(BLAST)

001: MLEVKRHSLS TDGFEPVEDI NLGNIKYRDR MCQTLYPELG QESLIPCQEP PLPKSQAVDC PNVSTIACKY ATIFQEFLQD SDLPVWNRFK NTGFWRQLTV
101: REGRTNGNVV DAETFGGIAE SCLKTIGA

Best Arabidopsis Sequence Match ( AT2G28450.2 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRYISCNPE TLVANAIELC TPSFDEPDRG NKNYRGRKKI GIAALARHRA KSMPTSEAFR PVKAMAVDLF PHTDHCEMVM
801: LLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.