CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24877	Soybean	nucleus	92.58	92.79
CDY60349	Canola	nucleus	33.82	59.72
VIT_06s0004g02940.t01	Wine grape	nucleus	56.4	59.55
CDY04566	Canola	nucleus	50.45	59.39
CDY15748	Canola	nucleus	50.11	58.3
Bra011947.1-P	Field mustard	nucleus	51.12	57.96
AT2G28450.1	Thale cress	nucleus	48.99	53.89
Solyc11g069340.1.1	Tomato	nucleus	55.06	53.2
CDY60348	Canola	golgi, vacuole	31.46	51.09
Zm00001d004541_P009	Maize	nucleus	47.3	49.36
EES10334	Sorghum	nucleus	47.75	49.3
KRH54851	Soybean	cytosol	6.97	48.44
TraesCS2B01G051800.1	Wheat	nucleus	47.53	47.26
GSMUA_Achr5P18510_001	Banana	nucleus	34.83	47.11
Os04t0105000-01	Rice	nucleus	25.62	46.82
HORVU2Hr1G005690.1	Barley	nucleus	47.87	46.61
TraesCS2A01G039200.1	Wheat	nucleus	47.87	46.3
Zm00001d024928_P003	Maize	nucleus	45.28	46.06
TraesCS2D01G037700.2	Wheat	nucleus	47.53	45.98
KRH23347	Soybean	nucleus	16.63	27.77
KRH09984	Soybean	mitochondrion	11.24	26.81

Protein Annotations

EntrezGene:100816103	MapMan:15.5.16	Gene3D:3.30.70.330	Gene3D:3.40.1350.30	Gene3D:4.10.1000.10	EMBL:ACUP02006836
ncoils:Coil	EnsemblPlantsGene:GLYMA_11G147200	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR010280	InterPro:IPR012677	UniProt:K7LQG4	EnsemblPlants:KRH29928	ProteinID:KRH29928	ProteinID:KRH29928.1
InterPro:MeTrfase_TrmA_AS	InterPro:Methyltranfer_dom	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00642	PFAM:PF05958	PFAM:PF13847
ScanProsite:PS01230	PFscan:PS50103	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF24	InterPro:RBD_domain_sf
InterPro:SAM-dependent_MTases	SMART:SM00356	SUPFAM:SSF53335	SUPFAM:SSF54928	SUPFAM:SSF90229	InterPro:U5_MeTrfase_fam
UniParc:UPI000296BCFE	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:11352270..11357548

Molecular Weight (calculated)

96785.8 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.454

Length

890 amino acids

Sequence
(BLAST)

001: MTEPLSNTEL SSSKTLDPTN RHDSTSEPHQ TAPEEVELNR EDDVVPTAKR KRNDGVVEDR LLHPLWKTSL CSYFRSHNGS CSHGGACRYA HGEEELRLRP
101: DNTWDPTSER AKKALKTESD DKRAVSEEVM MTEAVVDDGD ADGDDGCGAN HALSKCLVHL PRKWSSENFR TFLSEQGIAF KHAKKKKGMM IGFVTFEDEE
201: QLKSSTKELE GKSIGNKTVK VADVLPRSFE KKSNASVASH QELDEGVDVA SSGTLDGETN NDNLAKTRNV RDAVTPLAHM AYADQLEQKK SALMLILKKL
301: TRNARKACPN GVSLPEWILK SREIGGLPCK LEGIIASPIV NGYRNKCEFS VGYSLGGKVT VGFMLGNFRE GVTAVEEAVD CPNVSTIACK YATIFQEFLQ
401: DSDLPVWNRF KNTGFWRQLT VREGRTNGNA VDAETFGGIA EVMLIVQVST ASFDDAKVAA EFKRLAQAFV VGATSHCSTL PLTALVVQDH QGISNVAPAD
501: APLHLLPIPK AAGDSEVDEN NNAKDVRIHD YVNNLQFSIS PTAFFQVNTL AAEKLYSLAG DWACLGPDTL LFDICCGTGT IGLTLAHRVG MVIGIEMNAS
601: AVSDAHRNAE INGIKNIKFI CSKAEDVMGS LLREHLNVTK EQVDDPNISG KGNDSPEDSA CPEPENGELA SHCPENNNAE VGSEVQKGST CEQADGISEQ
701: AEDVMGSLLR DDANMPKEQS DYPNISGSGN DIPEDSTFPV PENGETTSHS ESNNAEVGGE VQKGSTSRNG KTSLQQFKNV VAIVDPPRAG LHPTVIKALR
801: THPGLRRLVY ISCNPETLVA NAIELCTPSP LKIEKGNKDN RGWRNMSSAG LARHRAKSMP ISEAFHPVKA MAVDLFPHTP HCELVMLLER

Best Arabidopsis Sequence Match ( AT2G28450.1 )
(BLAST)

001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER

Arabidopsis Description

Zinc finger CCCH domain-containing protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.