Factsheet for Zm00001d039477_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00136	Sorghum	mitochondrion	94.27	94.27
TraesCS3B01G124400.1	Wheat	mitochondrion	82.62	82.62
TraesCS3D01G108100.1	Wheat	mitochondrion	82.44	82.44
TraesCS3A01G105900.1	Wheat	mitochondrion	82.44	82.29
Os01t0193600-01	Rice	mitochondrion, plastid	81.9	82.05
HORVU3Hr1G019340.3	Barley	plastid	81.72	77.42
KRH23347	Soybean	nucleus	62.54	65.48
AT3G21300.1	Thale cress	mitochondrion	61.83	62.27
Bra031272.1-P	Field mustard	mitochondrion	61.47	61.58
Solyc03g121260.2.1	Tomato	plastid	60.93	59.75
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	64.34	59.63
CDY56917	Canola	plastid	61.83	59.18
CDY51452	Canola	plastid	61.83	58.67
KRH09984	Soybean	mitochondrion	38.53	57.64
VIT_09s0002g02670.t01	Wine grape	plastid	57.89	56.67
PGSC0003DMT400006437	Potato	plastid	60.93	53.21
Bra008455.1-P	Field mustard	cytosol	11.11	49.6
CDY37612	Canola	cytosol	11.11	49.6
Bra019367.1-P	Field mustard	cytosol	11.11	49.6
CDX88149	Canola	cytosol	10.57	47.58
Bra009808.1-P	Field mustard	cytosol	10.57	47.58
Zm00001d004541_P009	Maize	nucleus	25.45	16.65
Zm00001d024928_P003	Maize	nucleus	24.19	15.43

Protein Annotations

EntrezGene:100275594	Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1
EMBL:BT067709	UniProt:C0PHE0	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	InterPro:IPR002792	InterPro:IPR010280	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold
ProteinID:ONM28942.1	PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061
PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom
InterPro:U5_MeTrfase_fam	UniParc:UPI000195CCA2	EnsemblPlantsGene:Zm00001d039477	EnsemblPlants:Zm00001d039477_P001	EnsemblPlants:Zm00001d039477_T001	SEG:seg

Description

RNA methyltransferase family protein

Coordinates

chr3:-:5328994..5333477

Molecular Weight (calculated)

61898.0 Da

IEP (calculated)

8.008

GRAVY (calculated)

-0.201

Length

558 amino acids

Sequence
(BLAST)

001: MAAHAVTPLT ICCLRRGVPL NHSRRLLAVA AAAPESPAPT PAPSQLPLPP VPPRKGYFPK RGETVELTCE ALAFKGKGVC KVAGSTFVLL CDGALPGERL
101: IARVRRLRRG AFAEAAKLRT LEPHHDAIEA PCPLAADCGG CKTQSLAYAA QIRHKHHQVR DLLVNFGKFD PKRLESSEPD DILKPTVQCD EIFRYRNKME
201: FSFGTKRWVQ KELKDKGEEV EVKQETNETD GYALGLHAPG FFDKVLHVQK CFLQSEPADK VLAVVQETWM DPAIGLTPYD VHKHVGFLKH LMIRTGRNIS
301: TGTPEVMVNF VTSCYKPDVL MPLVDKITKI PEVVSVINNV NSSVGNSSVG EQEYTLYGKP NITEMLRGLA FQISANSFFQ TNTKQADVLY KLIEDSAGLK
401: GDGSEIVLDL FCGTGTIGLT FARRAKHIYG YEVVPEAIED ARKNAKLNGI NNATFVQGDL NKINESFGKE FPKPDIIISD PNRPGMHMKL IKWLLEVKAP
501: RIVYVSCNPA TCARDLDYLC HGVEEKDLRG FYELKSVIPV DMFPHTPHIE CVCLLELR

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.