Factsheet for VIT_09s0002g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23347	Soybean	nucleus	64.91	69.42
Bra008455.1-P	Field mustard	cytosol	14.91	68.0
Bra019367.1-P	Field mustard	cytosol	14.91	68.0
CDY37612	Canola	cytosol	14.91	68.0
Bra031272.1-P	Field mustard	mitochondrion	64.74	66.25
AT3G21300.1	Thale cress	mitochondrion	64.04	65.88
CDY56917	Canola	plastid	66.14	64.67
CDY51452	Canola	plastid	66.14	64.12
Solyc03g121260.2.1	Tomato	plastid	63.68	63.8
KRH09984	Soybean	mitochondrion	41.4	63.27
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	65.96	62.46
CDX88149	Canola	cytosol	13.16	60.48
Bra009808.1-P	Field mustard	cytosol	13.16	60.48
EES00136	Sorghum	mitochondrion	58.25	59.5
Os01t0193600-01	Rice	mitochondrion, plastid	57.19	58.53
TraesCS3A01G105900.1	Wheat	mitochondrion	57.02	58.14
Zm00001d039477_P001	Maize	plastid	56.67	57.89
TraesCS3D01G108100.1	Wheat	mitochondrion	56.32	57.53
PGSC0003DMT400006437	Potato	plastid	64.21	57.28
TraesCS3B01G124400.1	Wheat	mitochondrion	55.96	57.17
HORVU3Hr1G019340.3	Barley	plastid	57.02	55.18
VIT_06s0004g02940.t01	Wine grape	nucleus	22.81	15.42

Protein Annotations

EntrezGene:100261689	wikigene:100261689	Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150
MapMan:50.2.1	ProteinID:CBI35993	ProteinID:CBI35993.3	UniProt:D7U047	EMBL:FN596494	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR002792
InterPro:IPR010280	EntrezGene:LOC100261689	wikigene:LOC100261689	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold	PFAM:PF05958
ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases
SUPFAM:SSF50249	SUPFAM:SSF53335	TIGR:TC59714	TIGRFAMs:TIGR00479	InterPro:TRAM_dom	InterPro:U5_MeTrfase_fam
UniParc:UPI0001983E63	ArrayExpress:VIT_09s0002g02670	EnsemblPlantsGene:VIT_09s0002g02670	EnsemblPlants:VIT_09s0002g02670.t01	unigene:Vvi.11016	RefSeq:XP_002276511
RefSeq:XP_002276511.1	RefSeq:XP_002276511.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:2427377..2433782

Molecular Weight (calculated)

63594.7 Da

IEP (calculated)

7.869

GRAVY (calculated)

-0.195

Length

570 amino acids

Sequence
(BLAST)

001: MSVMSILHFI PNLHFAATGV QQQPRPPPMA TVPTYGLRWL NSGRPWMQNF RRSSILSSAI PAIQDSEESQ FDSPKPKTQS YFPKRGQTLE LVCESLAFKG
101: KGLCKVADTG FVVLCDRALP GERFVGRVTR KKGNYAEVTK VETISPHWDI VDAPCEYASN CGGCKTQNLS YEAQVRAKEQ QVQELVIHVG KFSDKDPEFS
201: SIMKPIVPCD VQFHYRNKME FSFATQKWLP RELLHEKEDG ASGYALGLHA PGFFDKVLNV NKCLLQSEPA NTVLAAIQEC WRDPQFGLSP YNVHSHDGFL
301: KHLVLRTGRD IKTGLPELMV NFVTSSYKPE LLKPLVEKIS AIPEVVSIVN NINTSVGSTS VGEQEYILHG KSAITEILRG LTFQISANSF FQTNTHQAEV
401: LYKLIEDCAG LRGDGSEIVL DLFCGTGTIG LTLSRRVRHV YGYEVVAQAV SDARRNAKLN GICNATFIEG DLNKIGENFG KDFPKPDVVI SDPNRPGMHM
501: KLIKFLLKLK APRIVYVSCN PATCARDLDY LCHGVVEQNI EGCYKLKSLQ PVDMFPHTPH IECVCLLELR

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.