Factsheet for PGSC0003DMT400006437

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121260.2.1	Tomato	plastid	78.25	87.87
KRH23347	Soybean	nucleus	59.0	70.73
AT3G21300.1	Thale cress	mitochondrion	58.37	67.33
Bra031272.1-P	Field mustard	mitochondrion	58.69	67.33
Bra008455.1-P	Field mustard	cytosol	12.99	66.4
Bra019367.1-P	Field mustard	cytosol	12.99	66.4
CDY37612	Canola	cytosol	12.99	66.4
CDY56917	Canola	plastid	59.0	64.67
VIT_09s0002g02670.t01	Wine grape	plastid	57.28	64.21
CDY51452	Canola	plastid	58.84	63.95
EES00136	Sorghum	mitochondrion	53.52	61.29
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	57.59	61.13
KRH09984	Soybean	mitochondrion	35.68	61.13
Zm00001d039477_P001	Maize	plastid	53.21	60.93
TraesCS3A01G105900.1	Wheat	mitochondrion	53.21	60.82
TraesCS3D01G108100.1	Wheat	mitochondrion	53.05	60.75
TraesCS3B01G124400.1	Wheat	mitochondrion	52.9	60.57
Os01t0193600-01	Rice	mitochondrion, plastid	52.58	60.32
CDX88149	Canola	cytosol	11.58	59.68
Bra009808.1-P	Field mustard	cytosol	11.58	59.68
HORVU3Hr1G019340.3	Barley	plastid	53.36	57.89

Protein Annotations

EntrezGene:102599993	Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR002792
InterPro:IPR010280	UniProt:M0ZRC0	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold	PFAM:PF05958	EnsemblPlantsGene:PGSC0003DMG400002513
PGSC:PGSC0003DMG400002513	EnsemblPlants:PGSC0003DMT400006437	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061
PANTHER:PTHR11061:SF30	InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom
InterPro:U5_MeTrfase_fam	UniParc:UPI000296767A	SEG:seg	:	:	:

Description

RNA m5u methyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400002513]

Coordinates

chr3:-:60558382..60564414

Molecular Weight (calculated)

71233.1 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.240

Length

639 amino acids

Sequence
(BLAST)

001: MAAAVATFGI RSVPSNIWLH KFGARTAAAS IRSRSFTTLA SLSPVEDTED IQLNVIPKEN ARESVSSTSN NNNYKSNKSY YPKRGQTLEL VCESLAFKGK
101: GVCKVADSGF VLMCDRALPG ERFIGRVTRK KDNYAEVKKL KTITPHSDYV EAPCEYASHC GGCKTQSLSY EAQLKAKEQQ VCDLVVHVGK FSDQEPEFAG
201: VMKPIVPCDI QFHYRNKESE ELDILLTANA SFGLAVMMEF SFGPKGWVPA EQLQEKSTDE CVYALGLHAP GFFDKVLNVN KCLLQSDSAN EKSGNESCAT
301: WRRTVIVEDY GVQEGRRKHH NVLEKENENM HEFHGYISFK VVLATVQECW RDPELGLSPW NVHSHTGFLK HLMLRSGRNI ETGLPELMVN FVTSSDNPEC
401: LRPLVEKIAT IPEVVSIVNN VNTSIGNTSV GEKEYTLYGK STITEILRGL TFQISANSFF QTNTRQADVL YKLIEDCAFL KGDGSEIVLD LFCGTGTIGL
501: TLAKRVKHVY GFEVVAQAVS DARQNATLNF INNATFIEGD LNKIDSTFAS NLPKPDIVIT DPNRPGMHIK LIKFLLRLRA SRIIYVSCNP ATCARDLNYL
601: CYGVPEQNIE GRYRLSSLQP VDMFPHTPHI ECVCSLELR

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.