Factsheet for TraesCS3A01G105900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G124400.1	Wheat	mitochondrion	97.85	98.03
TraesCS3D01G108100.1	Wheat	mitochondrion	97.5	97.67
HORVU3Hr1G019340.3	Barley	plastid	95.35	90.49
Os01t0193600-01	Rice	mitochondrion, plastid	83.72	84.02
EES00136	Sorghum	mitochondrion	83.54	83.69
Zm00001d039477_P001	Maize	plastid	82.29	82.44
KRH23347	Soybean	nucleus	63.15	66.23
AT3G21300.1	Thale cress	mitochondrion	62.79	63.36
Bra031272.1-P	Field mustard	mitochondrion	62.61	62.84
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	65.3	60.63
CDY56917	Canola	plastid	62.97	60.38
CDY51452	Canola	plastid	62.97	59.86
Solyc03g121260.2.1	Tomato	plastid	60.29	59.23
KRH09984	Soybean	mitochondrion	38.28	57.37
VIT_09s0002g02670.t01	Wine grape	plastid	58.14	57.02
PGSC0003DMT400006437	Potato	plastid	60.82	53.21
CDY37612	Canola	cytosol	11.63	52.0
Bra019367.1-P	Field mustard	cytosol	11.63	52.0
Bra008455.1-P	Field mustard	cytosol	11.63	52.0
CDX88149	Canola	cytosol	10.73	48.39
Bra009808.1-P	Field mustard	cytosol	10.73	48.39
TraesCS2A01G039200.1	Wheat	nucleus	25.76	15.65

Protein Annotations

Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008173	GO:GO:0009409	GO:GO:0009628
GO:GO:0009987	GO:GO:0016740	InterPro:IPR002792	InterPro:IPR010280	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold
PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30
InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom	EnsemblPlantsGene:TraesCS3A01G105900
EnsemblPlants:TraesCS3A01G105900.1	InterPro:U5_MeTrfase_fam	TIGR:cd02440	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:+:69660734..69665609

Molecular Weight (calculated)

61523.3 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.176

Length

559 amino acids

Sequence
(BLAST)

001: MAAAGAFSPL SGTLLRRRIP LHHHRRFLSI AAAASEAPAP APAPSQPPPP PPRPRGKGYF PKKNEILELT CEGLAFKGKG VCKVDGSSFV LLCDGALPGE
101: RLVARVRRLR RGAFAEASKL KTLSPHHDAV EAPCPLAADC GGCKSQSLAY SAQIHHKYVQ VRDLLVNFGK FDPRKLESSD SDAILKPIVP CDEIFRYRNK
201: MEFSFGTKRW MKREWKEEKE EVSKGEEVET DGYSLGLHAP GFFDKVLHVE TCLLHSEPAD QVLAVVQGSW TDPALGLTPY DVYKHTGFLK HLMIRTGRNV
301: STGAPELMVN FVTSCYKPEL LVPLVDRITK ISEVVSVVNN VNTSVGNTSV GEQEYTLYGK PTITEMLRGL TFQISANSFF QTNTKQADVL YKLIEDSAGL
401: KGDGSEIVLD LFCGTGTIGL TLARSAKHVY GYEVVPEAIA DAQKNAQLNG ISNATFVQGD LNKISETFGK EFPKPDIIIS DPNRPGMHMK LIKWLLEVKA
501: PRIVYVSCNP ATCARDLDYL CHGVEEKGLS GCYELKRVIP VDMFPHTPHI ECVCLLELC

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.