CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031272.1-P	Field mustard	mitochondrion	91.67	96.77
CDY37612	Canola	cytosol	19.56	92.0
CDY56917	Canola	plastid	90.31	91.08
AT3G21300.1	Thale cress	mitochondrion	81.63	86.64
CDX88149	Canola	cytosol	16.5	78.23
KRH23347	Soybean	nucleus	67.69	74.67
Solyc03g121260.2.1	Tomato	plastid	64.97	67.14
VIT_09s0002g02670.t01	Wine grape	plastid	64.12	66.14
KRH09984	Soybean	mitochondrion	41.33	65.15
GSMUA_Achr2P19450_001	Banana	cytosol, mitochondrion	66.5	64.95
Os01t0193600-01	Rice	mitochondrion, plastid	60.37	63.73
EES00136	Sorghum	mitochondrion	60.37	63.62
TraesCS3A01G105900.1	Wheat	mitochondrion	59.86	62.97
TraesCS3D01G108100.1	Wheat	mitochondrion	59.69	62.9
TraesCS3B01G124400.1	Wheat	mitochondrion	59.52	62.72
Zm00001d039477_P001	Maize	plastid	58.67	61.83
HORVU3Hr1G019340.3	Barley	plastid	59.86	59.76
PGSC0003DMT400006437	Potato	plastid	63.95	58.84
CDY60349	Canola	nucleus	18.54	21.63
CDY60348	Canola	golgi, vacuole	18.2	19.53
CDY04566	Canola	nucleus	23.3	18.12
CDY15748	Canola	nucleus	23.3	17.91

Protein Annotations

Gene3D:2.40.50.140	InterPro:23S_rRNA_MeTrfase_RlmD	Gene3D:3.40.1350.30	Gene3D:3.40.50.150	MapMan:50.2.1	GO:A0A078IND7
UniProt:A0A078IND7	EnsemblPlants:CDY51452	ProteinID:CDY51452	ProteinID:CDY51452.1	GO:GO:0001510	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00003493001	InterPro:IPR002792	InterPro:IPR010280	InterPro:MeTrfase_TrmA_CS	InterPro:NA-bd_OB-fold
PFAM:PF05958	ScanProsite:PS01231	PFscan:PS50926	PFscan:PS51687	PANTHER:PTHR11061	PANTHER:PTHR11061:SF30
InterPro:SAM-dependent_MTases	SUPFAM:SSF50249	SUPFAM:SSF53335	TIGRFAMs:TIGR00479	InterPro:TRAM_dom	InterPro:U5_MeTrfase_fam
UniParc:UPI0004EE9D29	SEG:seg	:	:	:	:

Description

BnaA05g36690DBnaA05g36690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IND7]

Coordinates

chrLK032996:+:61484..64261

Molecular Weight (calculated)

65063.3 Da

IEP (calculated)

7.733

GRAVY (calculated)

-0.207

Length

588 amino acids

Sequence
(BLAST)

001: MTNSPFITTS EKVIFLPLSS SLLTKTHTST PMLATTPAHA LRLRYVVPTR AWLHKFRCSS SSSAVPLAHL SASQLSGGNN NTLKANKEEN NSEKKTAPYY
101: PKRGQTVELV CESLGFKGKG ICKVDGTGFV VMCDRALPGE RFLGCVTRRK GSYAEVTKIK TLTPHRDLVE APCEYASYCG GCKAQNLSYE AQLRAKEEQV
201: HELITHVGRF SDNNPGLETV LKPIVPCDIQ FSYRNKMEFS FGPQRWLPVE MLHEREDGPV SFALGLHAPG FFDKVLNVDK CLLQSEPANM VLAAVQDCWR
301: DPQLSLSPYN ARSHAGFLKH LMLRTGRNVE TGSQELMVNF VTSSYKPELL KPLVDKVSSI PEVVSIMNNV NSSVGNTSVG EQEYTLYGKE TIAEVLRGLT
401: FQISANSFFQ TNTHQAEVLY KLIEECAGLK GDGSEVVLDL FCGTGTIGLT LARRAKHVYG YEVVPQAVTD AHKNAQINGI ENATFIQGDL NKIGEDFGSN
501: FPKPDIVISD PNRPGMHMKL IKFLLNLKSP RIIYVSCNPA TCARDLDYLC HGVEEKNIKG CYKLMSVQPV DMFPHTPHIE CVCLLELS

Best Arabidopsis Sequence Match ( AT3G21300.1 )
(BLAST)

001: MLAATPAHGL RYVVVPTRSW LHRFRCCSSS LAPLSPSEFS GGNKAQKKLN DENNTNVSNE KTAPYYPKRG ETVELVCESL GFKGKGICKV DGTGYVVMCD
101: RALPGERFLG RVTRRKGSYA EVTKMKTISP HKDLVEAPCE YASYCGGCKT QNLSYEAQLR AKEEQVHELI RHVGRFSDNN PGLEIVLKPI VACDIQFHYR
201: NKMEFSFGPQ RWLPIEMLNE RQDGPKNFAL GLHAPGFFDK VLNVDKCLLQ SEPGNLVLAA VQDCWRDPEL SLSPYDCRSH VGFLKHLMLR TGRNVETGSL
301: ELMVNFVTSS YKPELLKPLV DRISSIPQVV SIMNNVNSSV GNTSVGEKEY TLYGKDTITE VLRGLTFQIS ANSFFQTNTH QAEVLYKLIE ESAGLKGDGS
401: EVVLDLFCGT GTIGLTLARR AKHVYGYEVV PQAITDAHKN AQINGIENAT FIQGDLNKIG EDFGNNFPKP DIVISDPNRP GMHMKLIKFL LKLKSPRIIY
501: VSCNPATCAR DLDYLCHGVE EKNLKGCYKL MSVQPVDMFP HTPHIECVCL LELA

Arabidopsis Description

RNA methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.