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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 25041515
gfp PMID: 25041515 doi
K Shiono, M Ando, S Nishiuchi, H Takahashi, K Watanabe, M Nakamura, Y Matsuo, N Yasuno, U Yamanouchi, M Fujimoto, H Takanashi, K Ranathunge, RB Franke, N Shitan, NK Nishizawa, I Takamure, M Yano, N Tsutsumi, L Schreiber, K Yazaki, M Nakazono, K Kato
Department of Bioscience, Fukui Prefectural University, 4-1-1 Matsuoka-Kenjyojima, Eiheiji, Fukui, 910-1195, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028689_P001 Maize cytosol, peroxisome, plasma membrane 80.43 80.13
EER95064 Sorghum cytosol, peroxisome, plasma membrane 80.18 79.27
TraesCS4B01G200600.1 Wheat cytosol, peroxisome, plasma membrane 79.42 78.91
TraesCS4A01G103400.1 Wheat cytosol, peroxisome, plasma membrane 79.42 78.52
TraesCS4D01G201700.1 Wheat mitochondrion, plasma membrane, plastid 79.42 74.32
CDY44641 Canola plasma membrane 26.56 70.37
Bra005049.1-P Field mustard plasma membrane 26.43 70.03
Bra005051.1-P Field mustard plastid 53.24 68.24
CDX74853 Canola plastid 53.24 67.91
PGSC0003DMT400060438 Potato cytosol, peroxisome, plasma membrane, plastid 60.36 65.61
Bra008817.1-P Field mustard cytosol, peroxisome, plasma membrane, plastid 60.1 65.15
CDX69629 Canola plastid 60.1 64.97
AT5G13580.1 Thale cress cytosol, peroxisome, plasma membrane 59.85 64.79
VIT_13s0067g03750.t01 Wine grape cytosol, peroxisome, plasma membrane 61.25 64.52
AT3G55090.1 Thale cress cytosol, peroxisome, plasma membrane 60.23 64.4
KRH67592 Soybean plastid 59.85 64.17
Solyc05g054890.2.1 Tomato cytosol 61.12 64.13
VIT_08s0040g02840.t01 Wine grape cytosol, peroxisome, plasma membrane 59.72 63.86
KRG95875 Soybean cytosol, peroxisome, plasma membrane 59.34 63.45
PGSC0003DMT400029881 Potato cytosol, peroxisome, plasma membrane 58.32 63.4
Solyc04g010200.1.1 Tomato cytosol, peroxisome, plasma membrane 57.81 63.37
Os05t0120200-01 Rice plasma membrane 55.91 62.95
CDY09810 Canola plastid 60.1 62.9
PGSC0003DMT400029838 Potato extracellular 55.27 62.59
KRG92984 Soybean cytosol, peroxisome, plasma membrane 59.47 62.4
AT3G53510.1 Thale cress plasma membrane 58.58 62.38
Solyc04g010210.1.1 Tomato extracellular 56.54 62.32
AT2G39350.1 Thale cress cytosol 58.58 62.3
Bra005048.1-P Field mustard cytosol, nucleus, plasma membrane 58.58 61.96
AT2G37360.1 Thale cress cytosol, peroxisome, plasma membrane 59.21 61.72
CDX93388 Canola plasma membrane 58.07 61.67
Os05t0120000-00 Rice plasma membrane 53.11 61.47
Solyc09g005970.1.1 Tomato plasma membrane 57.56 61.38
CDY18451 Canola cytosol, peroxisome, plasma membrane 57.81 61.32
Bra017193.1-P Field mustard cytosol, peroxisome, plasma membrane 57.81 61.32
PGSC0003DMT400061466 Potato plasma membrane 57.69 61.27
Os01t0836600-01 Rice plasma membrane 57.81 60.75
CDX73549 Canola cytosol, peroxisome, plasma membrane 58.07 60.45
HORVU4Hr1G058070.2 Barley cytosol 61.88 59.75
CDY02907 Canola cytosol, peroxisome, plasma membrane 48.03 59.53
AT3G55100.1 Thale cress cytosol, peroxisome, plasma membrane 49.68 59.06
CDX76119 Canola cytosol, peroxisome, plasma membrane 49.17 58.02
AT3G55110.1 Thale cress cytosol, peroxisome, plasma membrane 52.1 57.91
CDX76121 Canola cytosol 34.56 57.75
Bra014775.1-P Field mustard cytosol, peroxisome, plasma membrane 50.95 57.37
CDX67624 Canola cytosol, peroxisome, plasma membrane 51.08 56.86
Bra003208.1-P Field mustard cytosol, peroxisome, plasma membrane 50.95 56.72
Bra007141.1-P Field mustard cytosol, peroxisome, plasma membrane 50.95 56.64
Bra014773.1-P Field mustard cytosol, peroxisome, plasma membrane 51.08 56.62
CDY40201 Canola cytosol 50.83 56.5
CDY37656 Canola cytosol, peroxisome, plasma membrane 50.06 55.26
CDY65003 Canola cytosol, peroxisome, plasma membrane 49.81 54.9
AT3G55130.1 Thale cress mitochondrion, peroxisome, plasma membrane 50.57 54.9
Bra035353.1-P Field mustard cytosol, peroxisome, plasma membrane 49.68 54.69
CDX73404 Canola plasma membrane 51.08 50.95
Bra007006.1-P Field mustard cytosol, peroxisome, plasma membrane 58.2 48.41
CDY50899 Canola cytosol 19.31 45.65
Bra014774.1-P Field mustard plasma membrane 36.21 45.02
Os07t0191600-04 Rice nucleus, peroxisome, plasma membrane 33.55 38.04
Os03t0282100-00 Rice cytosol, nucleus, plastid 36.09 37.08
CDX76122 Canola plasma membrane 59.72 36.66
Bra014776.1-P Field mustard cytosol 59.72 36.6
CDY02906 Canola plasma membrane 59.34 36.34
GSMUA_Achr6P08820_001 Banana plasma membrane 52.22 33.25
Os09t0401100-01 Rice extracellular 36.59 32.95
Os01t0615500-00 Rice plastid 25.41 32.63
Os06t0503100-01 Rice cytosol, peroxisome, plasma membrane 20.08 32.51
Os05t0384600-01 Rice cytosol, endoplasmic reticulum, peroxisome, plastid 25.41 29.63
Os11t0177400-01 Rice plasma membrane 16.52 27.48
Os01t0121700-01 Rice plasma membrane 22.36 26.35
Os06t0607700-01 Rice plasma membrane 22.62 25.87
Os03t0157400-01 Rice cytosol, peroxisome, plasma membrane 24.27 24.77
Os08t0167000-01 Rice cytosol, nucleus, plasma membrane 22.87 23.78
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300EntrezGene:4332449InterPro:AAA+_ATPaseProteinID:AAN64474.1InterPro:ABC_2_trans
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSProteinID:ABF95316.1EMBL:AK072135ProteinID:BAF11660.1ProteinID:BAS83580.1
ProteinID:EAZ26487.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005618GO:GO:0005623GO:GO:0005886GO:GO:0006810
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009408
GO:GO:0009628GO:GO:0009653GO:GO:0009719GO:GO:0009733GO:GO:0009737GO:GO:0009739
GO:GO:0009751GO:GO:0009753GO:GO:0009987GO:GO:0010345GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0019748GO:GO:0030312GO:GO:0042626GO:GO:0048225
GO:GO:0048226GO:GO:0055075GO:GO:0055078GO:GO:0055085GO:GO:0071456GO:GO:0071470
GO:GO:0071472GO:GO:1901002GO:GO:1902074GO:GO:2000032InterPro:IPR003439EnsemblPlantsGene:Os03g0281900
EnsemblPlants:Os03t0281900-01InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF01061ScanProsite:PS00211PFscan:PS50893
PANTHER:PTHR19241PANTHER:PTHR19241:SF180UniProt:Q8H8V7SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelix
UniParc:UPI00000AD14CRefSeq:XP_015628264.1SEG:seg:::
Description
ABC TRANSPORTER G FAMILY MEMBER 5ATP-binding cassette (ABC) transporter, Hypodermal suberization of roots, Salt stress tolerance (Os03t0281900-01)
Coordinates
chr3:+:9654333..9657024
Molecular Weight (calculated)
86973.0 Da
IEP (calculated)
9.259
GRAVY (calculated)
-0.001
Length
787 amino acids
Sequence
(BLAST)
001: MSRFVDKLPL FDRRPSPMEE AEGLPRSGYL GQLHHHQYYQ PHSNMLPLEQ SPPTSTKHTS VTLAQLLKRV NDARSGSSTP ISSPRYTIEL GGSKPESVSS
101: ESDDHHSDDG GSEGQPRALV LKFTDLTYSV KQRRKGSCLP FRRAAADEPE LPAMRTLLDG ISGEARDGEI MAVLGASGSG KSTLIDALAN RIAKESLHGS
201: VTINGESIDS NLLKVISAYV RQEDLLYPML TVEETLMFAA EFRLPRSLPT REKKKRVKEL IDQLGLKRAA NTIIGDEGHR GVSGGERRRV SIGVDIIHNP
301: IMLFLDEPTS GLDSTSAFMV VTVLKAIAQS GSVVVMSIHQ PSYRILGLLD RLLFLSRGKT VYYGPPSELP PFFLDFGKPI PDNENPTEFA LDLIKEMETE
401: TEGTKRLAEH NAAWQLKHHG EGRGYGGKPG MSLKEAISAS ISRGKLVSGA TDGTVSVAAS DHSAPPPSSS SVSKFVNPFW IEMGVLTRRA FINTKRTPEV
501: FIIRLAAVLV TGFILATIFW RLDESPKGVQ ERLGFFAIAM STMYYTCSDA LPVFLSERYI FLRETAYNAY RRSSYVLSHT IVGFPSLVVL SFAFALTTFF
601: SVGLAGGVNG FFYFVAIVLA SFWAGSGFAT FLSGVVTHVM LGFPVVLSTL AYFLLFSGFF INRDRIPRYW LWFHYISLVK YPYEAVMQNE FGDPTRCFVR
701: GVQMFDNTPL AALPAAVKVR VLQSMSASLG VNIGTGTCIT TGPDFLKQQA ITDFGKWECL WITVAWGFLF RILFYISLLL GSRNKRR
Best Arabidopsis Sequence Match ( AT3G55090.1 )
(BLAST)
001: MSRILVEDDN ATPFHSMEII SSSLTLGQLL KNVSDVRKVE VGDETPVHEF FDRDGSSLDG DNDHLMRPVP FVLSFNNLTY NVSVRRKLDF HDLVPWRRTS
101: FSKTKTLLDN ISGETRDGEI LAVLGASGSG KSTLIDALAN RIAKGSLKGT VTLNGEALQS RMLKVISAYV MQDDLLFPML TVEETLMFAA EFRLPRSLPK
201: SKKKLRVQAL IDQLGIRNAA KTIIGDEGHR GISGGERRRV SIGIDIIHDP IVLFLDEPTS GLDSTSAFMV VKVLKRIAES GSIIIMSIHQ PSHRVLSLLD
301: RLIFLSRGHT VFSGSPASLP SFFAGFGNPI PENENQTEFA LDLIRELEGS AGGTRGLVEF NKKWQEMKKQ SNPQTLTPPA SPNPNLTLKE AISASISRGK
401: LVSGGGGGSS VINHGGGTLA VPAFANPFWI EIKTLTRRSI LNSRRQPELL GMRLATVIVT GFILATVFWR LDNSPKGVQE RLGFFAFAMS TMFYTCADAL
501: PVFLQERYIF MRETAYNAYR RSSYVLSHAI VTFPSLIFLS LAFAVTTFWA VGLEGGLMGF LFYCLIILAS FWSGSSFVTF LSGVVPHVML GYTIVVAILA
601: YFLLFSGFFI NRDRIPQYWI WFHYLSLVKY PYEAVLQNEF SDPTECFVRG VQLFDNSPLG ELTYGMKLRL LDSVSRSIGM RISSSTCLTT GADVLKQQGV
701: TQLSKWNCLL ITVGFGFLFR ILFYLCLLLG SKNKRR
Arabidopsis Description
ABCG16ABC transporter G family member 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2V7]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.