Factsheet for PGSC0003DMT400029881

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	92.82	93.59
PGSC0003DMT400029838	Potato	extracellular	85.36	88.92
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	77.62	77.62
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	77.07	74.7
Bra005051.1-P	Field mustard	plastid	62.98	74.27
CDX74853	Canola	plastid	62.98	73.91
KRG92984	Soybean	cytosol, peroxisome, plasma membrane	74.86	72.27
AT5G13580.1	Thale cress	cytosol, peroxisome, plasma membrane	71.27	70.98
Bra008817.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	71.13	70.94
CDX69629	Canola	plastid	71.27	70.88
AT2G39350.1	Thale cress	cytosol	70.86	69.32
AT3G55090.1	Thale cress	cytosol, peroxisome, plasma membrane	70.17	69.02
CDY09810	Canola	plastid	71.27	68.62
Bra005048.1-P	Field mustard	cytosol, nucleus, plasma membrane	70.17	68.28
PGSC0003DMT400061466	Potato	plasma membrane	67.54	65.99
GSMUA_Achr8P02140_001	Banana	cytosol, peroxisome, plasma membrane	63.95	65.58
GSMUA_Achr5P28450_001	Banana	plasma membrane	61.88	64.18
Os05t0120200-01	Rice	plasma membrane	61.19	63.38
HORVU5Hr1G021120.1	Barley	cytosol, peroxisome, plasma membrane	58.01	61.67
Zm00001d012438_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	63.26	61.64
Zm00001d028689_P001	Maize	cytosol, peroxisome, plasma membrane	66.71	61.14
Os05t0120000-00	Rice	plasma membrane	57.32	61.03
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	62.71	60.94
HORVU0Hr1G007130.1	Barley	plasma membrane, plastid	63.67	60.9
HORVU3Hr1G087130.1	Barley	plasma membrane, plastid	63.67	60.9
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	57.18	60.79
TraesCS3B01G387500.1	Wheat	plastid	63.4	60.63
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	63.26	60.58
TraesCS3A01G354500.1	Wheat	plasma membrane, plastid	63.26	60.58
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	66.57	60.55
Os01t0836600-01	Rice	plasma membrane	62.57	60.48
TraesCS5A01G078500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	56.77	60.35
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	56.77	60.35
Zm00001d011006_P001	Maize	cytosol, peroxisome, vacuole	59.12	60.11
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	57.6	60.09
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	59.25	60.08
Zm00001d042953_P001	Maize	plasma membrane	63.12	60.05
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	57.32	59.97
EES17614	Sorghum	cytosol, peroxisome, vacuole	58.7	59.86
Zm00001d035553_P001	Maize	plasma membrane	58.98	59.8
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	65.19	59.6
HORVU3Hr1G007180.1	Barley	cytosol, peroxisome, plasma membrane	54.97	59.58
TraesCS4A01G103400.1	Wheat	cytosol, peroxisome, plasma membrane	65.47	59.55
TraesCS1A01G049600.2	Wheat	cytosol, peroxisome, plasma membrane	57.46	59.43
Os03t0281900-01	Rice	cytosol, plasma membrane	63.4	58.32
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	54.14	58.07
TraesCS3A01G036400.1	Wheat	cytosol, peroxisome, vacuole	53.73	57.63
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	65.06	56.0
HORVU1Hr1G009920.2	Barley	plasma membrane, plastid	57.6	52.85
GSMUA_Achr6P33280_001	Banana	cytosol, peroxisome, plasma membrane	63.67	51.28
HORVU4Hr1G058070.2	Barley	cytosol	51.52	45.77
HORVU4Hr1G058160.2	Barley	cytosol, peroxisome	40.88	45.12
HORVU5Hr1G021110.1	Barley	cytosol	25.83	43.59
CDX76122	Canola	plasma membrane	68.37	38.61
CDY02906	Canola	plasma membrane	68.51	38.6
Bra014776.1-P	Field mustard	cytosol	68.37	38.55
Os03t0282100-00	Rice	cytosol, nucleus, plastid	38.81	36.68
PGSC0003DMT400032370	Potato	plasma membrane	30.39	35.48
PGSC0003DMT400084876	Potato	cytosol	35.22	34.98
PGSC0003DMT400050007	Potato	cytosol	39.36	34.25
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	28.31	33.72
GSMUA_Achr6P08820_001	Banana	plasma membrane	57.46	33.66
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	27.35	33.22
PGSC0003DMT400062852	Potato	plastid	28.73	31.47
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	27.49	31.05
PGSC0003DMT400039671	Potato	plasma membrane	22.65	29.5
PGSC0003DMT400039676	Potato	plasma membrane	25.28	29.09
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	24.45	28.87
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	23.2	27.86
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	23.34	26.16
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	24.31	26.07
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	23.62	25.83
PGSC0003DMT400054994	Potato	plastid	25.28	25.21
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	23.34	23.37
PGSC0003DMT400002062	Potato	cytosol	23.76	22.63

Protein Annotations

EntrezGene:102580570	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1ATI1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400011482	PGSC:PGSC0003DMG400011482
EnsemblPlants:PGSC0003DMT400029881	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF428	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000294DE0A	RefSeq:XP_006361395.1	SEG:seg	:

Description

Stigma/style ABC transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400011482]

Coordinates

chr4:+:6560329..6562849

Molecular Weight (calculated)

81062.3 Da

IEP (calculated)

9.575

GRAVY (calculated)

0.116

Length

724 amino acids

Sequence
(BLAST)

001: MTRIVAQNVS PVRDCVPLYD RRQMLEMSSP TFAQLLNNVG DHVTGDETET SVHQVLTMEL PVQQSIPFVL SFSNLTYSVR VRRKSIFPAI SGRRADEPRS
101: TRTKVLLNDI SGEARDGELL AVLGASGSGK STLIDALANR IAKESLKGEV KLNGEPLHSK LLKVISAYVM QDDLLYPMLT VEETLMFSAE FRLPRTLSKS
201: KKKGRVQALI DQLGLRNAAK TIIGDEGHRG VSGGERRRVS IGIDIIHDPI ILFLDEPTSG LDSTSAFMVV KVLQRIAQSG SIVIMSIHQP SYRILGLLDR
301: LIFLSRGQTV YSGSPLNLPQ FFADFGHSIP ENENKTEFAL DLIRELEGSP DGTDNLVEFN RKWKNTNRNS AATPARYDLS LKEAISASIS RGKLVSGAAN
401: DAANPTSMVP TFANPIWTEM AVLSKRSFTN SWRMPEIFFV RFGAVMVTGF ILATMFWRLD DSPKGVRERI GFFAFAMSTT YYTCADALPV FIHERFIFMR
501: ETAYNAYRRS SYCLSHALVS IPALIFLSIS FAALTFWAVG LDGGASGFLF YLSVVLASFW AGNSFVTFLS GVIPHVMIGY VIVVAIFAYY LLFSGFFLNR
601: DRIPSYWIWF HYLSLVKYPY EAVLQNEFKD PTKCFVRGIQ LFDNSPLGDI SISLKEKLLD SISKTLNVRI TSSTCVMTGA DILVQQGITQ LNKWNCLWVT
701: IAWGFFFRIL FYFSLLLGSK NKRR

Best Arabidopsis Sequence Match ( AT5G13580.1 )
(BLAST)

001: MSRVVAADDN MALPFFSPEF GNVSGASSSP TTFAQLLQNV DDSTRRSHHQ HHVDVDLASP DQSVPFVLSF TDLTYSVKVR RKFTWRRSVS SDPGAPSEGI
101: FSSKTKTLLN GITGEARDGE ILAVLGASGS GKSTLIDALA NRIAKGSLKG NVTLNGEVLN SKMQKAISAY VMQDDLLFPM LTVEETLMFA AEFRLPRSLS
201: KSKKSLRVQA LIDQLGLRNA ANTVIGDEGH RGISGGERRR VSIGIDIIHD PILLFLDEPT SGLDSTSALS VIKVLKRIAQ SGSMVIMTLH QPSYRLLRLL
301: DRLLFLSRGQ TVFSGSPAML PRFFAEFGHP IPEHENRTEF ALDLIRELEG SAGGTRSLVE FNKGFRQRKA EPRSQTGLSL KEAISASISK GKLVSGATTT
401: THSSGSSPVS TIPTFANPFW VELAVLAKRS MTNSRRQPEL FGIRLGAVLV TGFILATMFW QLDNSPKGVQ ERLGCFAFAM STTFYTCADA LPVFLQERFI
501: FMRETAYNAY RRSSYVLSHS LVALPSLIIL SLAFAAITFW GVGLDGGLMG FLFYFLVILA SFWAGSSFVT FLSGVVPHVM LGYTIVVAIL AYFLLFSGFF
601: INRDRIPGYW IWFHYISLVK YPYEAVLLNE FGDPTKCFVR GVQIFDNTPL VAVPQGMKVR LLATMSKSLG MRITSSTCLT TGYDILQQQG VTDLTKWNCL
701: WVTVAWGFFF RILFYFSLLL GSKNKRR

Arabidopsis Description

ABCG6ABC transporter G family member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNB5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.