Factsheet for PGSC0003DMT400002062

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	91.45	96.26
GSMUA_Achr8P34440_001	Banana	plasma membrane	51.18	68.37
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	62.89	61.6
PGSC0003DMT400054994	Potato	plastid	55.79	58.4
PGSC0003DMT400039671	Potato	plasma membrane	35.13	48.02
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	37.24	46.17
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	39.34	44.3
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	35.13	44.28
PGSC0003DMT400039676	Potato	plasma membrane	36.58	44.2
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	36.05	42.41
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	36.45	41.84
PGSC0003DMT400032370	Potato	plasma membrane	22.11	27.1
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	21.32	26.64
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	22.24	26.37
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	23.82	25.0
PGSC0003DMT400061466	Potato	plasma membrane	24.34	24.97
PGSC0003DMT400029838	Potato	extracellular	22.63	24.75
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	18.82	23.99
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	22.76	23.93
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	22.63	23.76
PGSC0003DMT400084876	Potato	cytosol	22.11	23.05
PGSC0003DMT400062852	Potato	plastid	20.0	23.0
PGSC0003DMT400050007	Potato	cytosol	21.58	19.71

Protein Annotations

EntrezGene:102581373	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M0ZJJ9	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400000787	PGSC:PGSC0003DMG400000787
EnsemblPlants:PGSC0003DMT400002062	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF286	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295BE65	RefSeq:XP_006362828.1	SEG:seg	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400000787]

Coordinates

chr4:-:58762843..58766802

Molecular Weight (calculated)

84933.2 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.045

Length

760 amino acids

Sequence
(BLAST)

001: MEHELDHSKS IDKEEAVIMQ NIDGDEIFPP EKNRNSFCIR KIEGNKKTKT RLMKMRSLDS AEESPVHGKS LCHARSFSSH FLINIDEMMS DIDNEKGALL
101: SKTPSGKMGS FSSDRSPISS SSISDDVTLE NSQKKNNILK SKDQEDDDSC SWNRIQIEPT LRIRLKFQDV KYTVALKGVE NSDTEKCILQ GVSGSACPGE
201: ILALMGPSGG GKTTLLKLLS GKVKNDCGTI TFNDQPYNKS LKQRIGFVLQ DDVVFPHLTV KETLTYAALL RLPNTLSKEQ KKERAIGVIN ELGLERCQDT
301: IIGGAFVRGV SGGERKRVCI GNEILLNPSL LFLDEPTSGL DSTTALRIMQ MLRNTARAGK TVVTTIHQPS SRLFSRFDKL ILLGQGSSLY FGKASEAMLY
401: FSSIGCSPLI AMNPAEFLID LANGNITEKS IPSDLEDKLL PGNHHFKMQN EGPSPADVHE YFVGAYESRV ANIEKLKLLK HGLIEEDSEV QNWPNSRDSG
501: ATWCQQFTIL FGRSLKERNH EYFSCLRITQ VIATAIIVGL LWWNSDTSFP KRISDQAGLL FFISVFWGFF PLFTAIFTFP QERAMLVKER SVNMYKLSAY
601: FIARITTDLL LDLVLPVTFL VIVYFMVGLK LTFNAFSLTL LTILLSIIAA QGLGLAIGAA FMDVKKATTF ASVILMTFML SGGFFVQEVP AFMSWVRYIS
701: INYHTYRLLL KIQFKSLRNS KYGSVDDSSG VEVGAMLVMV IGYRVLAYFF LRKMKLRTST

Best Arabidopsis Sequence Match ( AT5G06530.2 )
(BLAST)

001: MSMEKPPLAS GLARTRSEQL YETVAADIRS PHGSMDANGV PATAPAAVGG GGTLSRKSSR RLMGMSPGRS SGAGTHIRKS RSAQLKLELE EVSSGAALSR
101: ASSASLGLSF SFTGFAMPPE EISDSKPFSD DEMIPEDIEA GKKKPKFQAE PTLPIFLKFR DVTYKVVIKK LTSSVEKEIL TGISGSVNPG EVLALMGPSG
201: SGKTTLLSLL AGRISQSSTG GSVTYNDKPY SKYLKSKIGF VTQDDVLFPH LTVKETLTYA ARLRLPKTLT REQKKQRALD VIQELGLERC QDTMIGGAFV
301: RGVSGGERKR VSIGNEIIIN PSLLLLDEPT SGLDSTTALR TILMLHDIAE AGKTVITTIH QPSSRLFHRF DKLILLGRGS LLYFGKSSEA LDYFSSIGCS
401: PLIAMNPAEF LLDLANGNIN DISVPSELDD RVQVGNSGRE TQTGKPSPAA VHEYLVEAYE TRVAEQEKKK LLDPVPLDEE AKAKSTRLKR QWGTCWWEQY
501: CILFCRGLKE RRHEYFSWLR VTQVLSTAVI LGLLWWQSDI RTPMGLQDQA GLLFFIAVFW GFFPVFTAIF AFPQERAMLN KERAADMYRL SAYFLARTTS
601: DLPLDFILPS LFLLVVYFMT GLRISPYPFF LSMLTVFLCI IAAQGLGLAI GAILMDLKKA TTLASVTVMT FMLAGGFFVK KVPVFISWIR YLSFNYHTYK
701: LLLKVQYQDF AVSINGMRID NGLTEVAALV VMIFGYRLLA YLSLRQMKIV T

Arabidopsis Description

ABCG22ABC transporter G family member 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93YS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.