Factsheet for PGSC0003DMT400084876

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098410.1.1	Tomato	nucleus	98.22	98.22
KRH74446	Soybean	cytosol, peroxisome, plasma membrane	65.43	71.09
KRH39507	Soybean	cytosol	70.37	70.27
GSMUA_Achr4P27670_001	Banana	cytosol, peroxisome, plasma membrane	55.97	64.25
TraesCS3B01G285600.1	Wheat	cytosol, peroxisome, plasma membrane	62.41	63.73
Os07t0191600-04	Rice	nucleus, peroxisome, plasma membrane	60.08	63.11
TraesCS3D01G254600.1	Wheat	cytosol, peroxisome, plasma membrane	62.41	63.11
TraesCS3A01G253700.1	Wheat	cytosol, peroxisome, plasma membrane	62.41	63.11
Zm00001d043722_P001	Maize	cytosol, peroxisome, plasma membrane	63.65	62.87
EES03493	Sorghum	cytosol, peroxisome, plasma membrane	62.83	62.57
PGSC0003DMT400050007	Potato	cytosol	44.44	38.94
HORVU3Hr1G066220.1	Barley	plastid	40.33	36.89
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	35.67	35.91
PGSC0003DMT400029838	Potato	extracellular	34.02	35.68
PGSC0003DMT400061466	Potato	plasma membrane	36.08	35.49
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	34.98	35.22
PGSC0003DMT400032370	Potato	plasma membrane	27.71	32.58
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	26.34	32.21
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	26.61	31.91
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	27.71	31.51
PGSC0003DMT400062852	Potato	plastid	26.75	29.5
PGSC0003DMT400039671	Potato	plasma membrane	21.12	27.7
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	22.22	26.87
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	23.59	26.63
PGSC0003DMT400039676	Potato	plasma membrane	22.91	26.55
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	22.09	26.26
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	23.59	25.98
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	23.73	25.63
PGSC0003DMT400054994	Potato	plastid	24.01	24.1
PGSC0003DMT400002062	Potato	cytosol	23.05	22.11
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	20.85	21.02

Protein Annotations

EntrezGene:102578622	MapMan:26.9.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1D890	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400034447
PGSC:PGSC0003DMG400034447	EnsemblPlants:PGSC0003DMT400084876	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF180
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000294DD6B	RefSeq:XP_006364698.1	SEG:seg

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400034447]

Coordinates

chr9:+:61225165..61227965

Molecular Weight (calculated)

81486.2 Da

IEP (calculated)

9.382

GRAVY (calculated)

-0.042

Length

729 amino acids

Sequence
(BLAST)

001: MGHVVDIGKP VNYTGGLEFS SLTYRVTKKI KDENGKWLSQ EVDLLHQITG YAPKGCITAV MGPSGAGKST LLDGLAGRIA SGSLRGKVSM GGLDMSPSLI
101: KGSSAYIMQD DRLFPMLTVY ETFMFAADFR LGSLSRTEKQ EKVERLIEQL GLSSTRNTYI GDEGTRGVSG GERRRVSIGV DIIHGPSLLF LDEPTSGLDS
201: TSAHSVIEKV HDIARAGSTV ILTIHQPSHR IQLLIDHLII LARGQLMYQG APNDVSHHLV RMGRKVPKNE SSIEHLIDVI QQYDQSELGV EAVAAFALTG
301: MKPPPISAAA HEMSASTVLP SPVRPSHRAK HQVVEAQGRD KSSKRLRLQT HAQDDTGFDH SVRSPWNTSK SWSASRSGVL QSIGFSPARR NDHRSPSVMG
401: SSPGCYAYST EIVQSTPTPH SSDYTVNEND YLTPNDFAHD INHSFHDLGP KFANSFFSET WILMRRNFIN IMRTPELFLS RLVVLSAMGI MMATMFLHPK
501: ENLQGITNRL SFFIFTCTLF FFSSNDAVPA FIQERFVFIR ETSHNKYRAS SYTIAGLVTY LPFLALQAAV YAVIVWFALS LRGPFIYFLV ILFMSLLSTN
601: SFVIFVSSVV PNYILGYAAV IAFTALFFLF CGYFLNSNDM PNYWKWMNYV STMTYPYEGL LMNQYQTNES FGKDPLGRDV TGFGILKSLN ISLDPTKKWE
701: KVYIMLGWAV FYRILFYIAL RLFSKNQRK

Best Arabidopsis Sequence Match ( AT2G39350.1 )
(BLAST)

001: MARIVAANDD DSMELNTISS IHDSTLGQLL KNVSDVRKMA IGDETPVHES LNQDYNDGYM RTVPFVLSFD NLTYNVSVRP KLDFRNLFPR RRTEDPEIAQ
101: TARPKTKTLL NNISGETRDG EIMAVLGASG SGKSTLIDAL ANRIAKGSLK GTVKLNGETL QSRMLKVISA YVMQDDLLFP MLTVEETLMF AAEFRLPRSL
201: PKSKKKLRVQ ALIDQLGIRN AAKTIIGDEG HRGISGGERR RVSIGIDIIH DPILLFLDEP TSGLDSTSAF MVVKVLKRIA QSGSIVIMSI HQPSHRVLGL
301: LDRLIFLSRG HTVYSGSPAS LPRFFTEFGS PIPENENRTE FALDLIRELE GSAGGTRGLI EFNKKWQEMK KQSNRQPPLT PPSSPYPNLT LKEAIAASIS
401: RGKLVSGGES VAHGGATTNT TTLAVPAFAN PMWIEIKTLS KRSMLNSRRQ PELFGIRIAS VVITGFILAT VFWRLDNSPK GVQERLGFFA FAMSTMFYTC
501: ADALPVFLQE RYIFMRETAY NAYRRSSYVL SHAIVSFPSL IFLSVAFAAT TYWAVGLDGG LTGLLFYCLI ILASFWSGSS FVTFLSGVVP SVMLGYTIVV
601: AILAYFLLFS GFFINRNRIP DYWIWFHYMS LVKYPYEAVL QNEFSDATKC FVRGVQIFDN TPLGELPEVM KLKLLGTVSK SLGVTISSTT CLTTGSDILR
701: QQGVVQLSKW NCLFITVAFG FFFRILFYFT LLLGSKNKRR

Arabidopsis Description

ABCG1ABC transporter G family member 1 [Source:UniProtKB/Swiss-Prot;Acc:O80946]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.