Factsheet for PGSC0003DMT400060438

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054890.2.1	Tomato	cytosol	97.51	94.13
PGSC0003DMT400029838	Potato	extracellular	74.59	77.7
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	77.62	77.62
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	79.83	77.38
Bra005051.1-P	Field mustard	plastid	65.47	77.2
KRG92984	Soybean	cytosol, peroxisome, plasma membrane	79.7	76.93
CDX74853	Canola	plastid	65.47	76.82
CDX69629	Canola	plastid	75.28	74.86
Bra008817.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	75.0	74.79
AT5G13580.1	Thale cress	cytosol, peroxisome, plasma membrane	73.89	73.59
CDY09810	Canola	plastid	75.28	72.47
AT2G39350.1	Thale cress	cytosol	73.62	72.03
AT3G55090.1	Thale cress	cytosol, peroxisome, plasma membrane	72.38	71.2
Bra005048.1-P	Field mustard	cytosol, nucleus, plasma membrane	72.65	70.7
GSMUA_Achr8P02140_001	Banana	cytosol, peroxisome, plasma membrane	67.82	69.55
PGSC0003DMT400061466	Potato	plasma membrane	69.75	68.15
GSMUA_Achr5P28450_001	Banana	plasma membrane	64.64	67.05
HORVU5Hr1G021120.1	Barley	cytosol, peroxisome, plasma membrane	59.94	63.73
Os05t0120200-01	Rice	plasma membrane	61.46	63.66
Zm00001d028689_P001	Maize	cytosol, peroxisome, plasma membrane	68.92	63.16
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	59.12	62.85
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	60.22	62.82
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	59.94	62.72
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	68.78	62.56
TraesCS5A01G078500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	58.7	62.41
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	58.7	62.41
TraesCS1A01G049600.2	Wheat	cytosol, peroxisome, plasma membrane	59.94	62.0
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	67.82	61.99
Zm00001d012438_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	63.54	61.91
TraesCS4A01G103400.1	Wheat	cytosol, peroxisome, plasma membrane	67.96	61.81
Os05t0120000-00	Rice	plasma membrane	58.01	61.76
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	60.77	61.62
HORVU3Hr1G087130.1	Barley	plasma membrane, plastid	64.36	61.56
HORVU0Hr1G007130.1	Barley	plasma membrane, plastid	64.36	61.56
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	63.12	61.34
TraesCS3B01G387500.1	Wheat	plastid	64.09	61.29
TraesCS3A01G354500.1	Wheat	plasma membrane, plastid	63.95	61.24
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	63.95	61.24
Zm00001d042953_P001	Maize	plasma membrane	64.23	61.1
Zm00001d011006_P001	Maize	cytosol, peroxisome, vacuole	60.08	61.1
HORVU3Hr1G007180.1	Barley	cytosol, peroxisome, plasma membrane	56.35	61.08
Os01t0836600-01	Rice	plasma membrane	62.85	60.75
EES17614	Sorghum	cytosol, peroxisome, vacuole	59.53	60.7
Zm00001d035553_P001	Maize	plasma membrane	59.81	60.64
Os03t0281900-01	Rice	cytosol, plasma membrane	65.61	60.36
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	55.11	59.11
TraesCS3A01G036400.1	Wheat	cytosol, peroxisome, vacuole	54.83	58.81
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	67.96	58.5
HORVU1Hr1G009920.2	Barley	plasma membrane, plastid	59.81	54.88
GSMUA_Achr6P33280_001	Banana	cytosol, peroxisome, plasma membrane	65.61	52.84
HORVU4Hr1G058160.2	Barley	cytosol, peroxisome	42.96	47.41
HORVU4Hr1G058070.2	Barley	cytosol	52.76	46.87
HORVU5Hr1G021110.1	Barley	cytosol	26.11	44.06
CDX76122	Canola	plasma membrane	70.58	39.86
CDY02906	Canola	plasma membrane	70.72	39.84
Bra014776.1-P	Field mustard	cytosol	70.58	39.8
Os03t0282100-00	Rice	cytosol, nucleus, plastid	38.54	36.42
PGSC0003DMT400084876	Potato	cytosol	35.91	35.67
PGSC0003DMT400032370	Potato	plasma membrane	30.39	35.48
PGSC0003DMT400050007	Potato	cytosol	40.61	35.34
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	29.28	34.87
GSMUA_Achr6P08820_001	Banana	plasma membrane	58.15	34.06
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	27.07	32.89
PGSC0003DMT400062852	Potato	plastid	29.42	32.22
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	28.31	31.98
PGSC0003DMT400039671	Potato	plasma membrane	23.2	30.22
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	24.59	29.52
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	24.86	29.36
PGSC0003DMT400039676	Potato	plasma membrane	25.28	29.09
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	24.59	27.55
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	24.31	26.59
PGSC0003DMT400054994	Potato	plastid	26.52	26.45
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	24.31	26.07
PGSC0003DMT400002062	Potato	cytosol	25.0	23.82
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	23.2	23.24

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1C5V2
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400023506	PGSC:PGSC0003DMG400023506	EnsemblPlants:PGSC0003DMT400060438
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF428	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000294C827	SEG:seg	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400023506]

Coordinates

chr5:+:50606922..50609932

Molecular Weight (calculated)

80440.5 Da

IEP (calculated)

9.192

GRAVY (calculated)

0.146

Length

724 amino acids

Sequence
(BLAST)

001: MEMSQASAYS SPTLGQMLKR VGDVRKEVTG DETPVHRILD MSDTQSISSH SLPFVLSFNN LTYSVKVRRK MSFPAILRQP AAGVSTGDPV AGENLFTNTK
101: FLLNNISGEA RDGEIVAVLG ASGSGKSTLI DALANRIAKE SLKGTITLNG EPLDSRLLKV ISAYVMQDDL LYPMLTVEET LMFAAEFRLP RSLSKSKKKM
201: RVQALIDQLG LRNAAKTIIG DEGHRGVSGG ERRRVSIGID IIHDPIILFL DEPTSGLDST SAYMVVKVLQ RIAQSGSIVI MSIHQPSYRI LGLLDRMLFL
301: SRGQTVYSGS PMNLPHFFSD FGHPIPDSEN RTEFALDLIR ELEGSPGGTK SLVEFNKTWE NTKRSNENPE IQTPTHGLSL KEAISASISR GKLVSGTTSD
401: IHTSPASMVP TYANPFWIEM LVLSKRSFTN SWRVPELFGI RLGAIVVTGF ILATMFWQLD DSPKGVQERL GFFAFAMSTT FYTCADALPV FLQERYIFMR
501: ETAYNAYRRS SYCLSHAIVS LPALIFLSFA FAAITFWAVG LVGGFSGFLF YFAIILASFW AGNSFVTFLS GVVPSVMLGY TIVVAILAYF LLFSGFFINR
601: DRIPPYWIWF HYLSLVKYPY EAVLQNEFDD ATKCFVKGIQ LFDNSPLGNV PNALKEKLLS TMSNTLNVKI TSSTCVTTGA DILVQQGITD LSKWNCLWIT
701: IAWGFFFRVL FYFSLLLGSK NKRR

Best Arabidopsis Sequence Match ( AT2G39350.1 )
(BLAST)

001: MARIVAANDD DSMELNTISS IHDSTLGQLL KNVSDVRKMA IGDETPVHES LNQDYNDGYM RTVPFVLSFD NLTYNVSVRP KLDFRNLFPR RRTEDPEIAQ
101: TARPKTKTLL NNISGETRDG EIMAVLGASG SGKSTLIDAL ANRIAKGSLK GTVKLNGETL QSRMLKVISA YVMQDDLLFP MLTVEETLMF AAEFRLPRSL
201: PKSKKKLRVQ ALIDQLGIRN AAKTIIGDEG HRGISGGERR RVSIGIDIIH DPILLFLDEP TSGLDSTSAF MVVKVLKRIA QSGSIVIMSI HQPSHRVLGL
301: LDRLIFLSRG HTVYSGSPAS LPRFFTEFGS PIPENENRTE FALDLIRELE GSAGGTRGLI EFNKKWQEMK KQSNRQPPLT PPSSPYPNLT LKEAIAASIS
401: RGKLVSGGES VAHGGATTNT TTLAVPAFAN PMWIEIKTLS KRSMLNSRRQ PELFGIRIAS VVITGFILAT VFWRLDNSPK GVQERLGFFA FAMSTMFYTC
501: ADALPVFLQE RYIFMRETAY NAYRRSSYVL SHAIVSFPSL IFLSVAFAAT TYWAVGLDGG LTGLLFYCLI ILASFWSGSS FVTFLSGVVP SVMLGYTIVV
601: AILAYFLLFS GFFINRNRIP DYWIWFHYMS LVKYPYEAVL QNEFSDATKC FVRGVQIFDN TPLGELPEVM KLKLLGTVSK SLGVTISSTT CLTTGSDILR
701: QQGVVQLSKW NCLFITVAFG FFFRILFYFT LLLGSKNKRR

Arabidopsis Description

ABCG1ABC transporter G family member 1 [Source:UniProtKB/Swiss-Prot;Acc:O80946]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.