Factsheet for PGSC0003DMT400004973

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	98.61	98.61
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	87.46	85.35
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	80.81	79.45
KRH07778	Soybean	cytosol, peroxisome, plasma membrane	79.57	78.96
KRH07253	Soybean	cytosol, peroxisome, plasma membrane	79.26	78.05
KRH28987	Soybean	cytosol, peroxisome, plasma membrane	79.41	77.73
KRH76470	Soybean	cytosol, peroxisome, plasma membrane	79.1	77.54
CDY49155	Canola	cytosol, peroxisome, plasma membrane	75.7	75.35
AT1G31770.1	Thale cress	cytosol, nucleus, peroxisome	75.54	75.31
Bra033878.1-P	Field mustard	cytosol, peroxisome, plastid	74.3	74.88
CDY47690	Canola	cytosol, peroxisome, plastid	74.3	74.88
CDY50951	Canola	cytosol, peroxisome, plastid	74.3	74.88
CDY12299	Canola	cytosol, peroxisome, plasma membrane	75.39	68.4
Bra023202.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.7	67.26
CDY12359	Canola	cytosol, nucleus, plasma membrane	29.26	62.79
GSMUA_Achr2P04580_001	Banana	plasma membrane	57.89	62.44
TraesCS4A01G370500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	63.78	60.5
TraesCS7A01G071700.1	Wheat	plastid	63.16	59.91
HORVU7Hr1G014870.1	Barley	cytosol, peroxisome, plasma membrane	63.31	59.71
TraesCS7D01G067300.1	Wheat	cytosol, nucleus, plasma membrane, plastid	63.47	59.68
GSMUA_Achr1P10650_001	Banana	cytosol, peroxisome, plasma membrane	64.55	55.97
PGSC0003DMT400039671	Potato	plasma membrane	47.83	55.58
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	58.05	55.56
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	52.48	55.3
Zm00001d024497_P001	Maize	plastid	60.99	54.2
Os08t0167000-01	Rice	cytosol, nucleus, plasma membrane	63.16	53.9
EES13415	Sorghum	plastid	62.23	53.67
PGSC0003DMT400039676	Potato	plasma membrane	50.93	52.31
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	45.67	48.92
PGSC0003DMT400054994	Potato	plastid	46.13	41.05
PGSC0003DMT400002062	Potato	cytosol	42.41	36.05
PGSC0003DMT400032370	Potato	plasma membrane	26.16	27.26
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	25.23	26.81
PGSC0003DMT400062852	Potato	plastid	26.63	26.02
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	23.68	25.67
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	27.86	24.9
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	24.61	24.8
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	27.55	24.59
PGSC0003DMT400029838	Potato	extracellular	25.54	23.74
PGSC0003DMT400084876	Potato	cytosol	26.63	23.59
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	26.16	23.34
PGSC0003DMT400061466	Potato	plasma membrane	26.63	23.21
PGSC0003DMT400050007	Potato	cytosol	26.47	20.55

Protein Annotations

EntrezGene:102579805	MapMan:11.4.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M0ZP96	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400001967
PGSC:PGSC0003DMG400001967	EnsemblPlants:PGSC0003DMT400004973	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF213
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000294FBB4	RefSeq:XP_006359961.1	SEG:seg

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400001967]

Coordinates

chr8:-:47264597..47268094

Molecular Weight (calculated)

72072.0 Da

IEP (calculated)

9.086

GRAVY (calculated)

0.067

Length

646 amino acids

Sequence
(BLAST)

001: MPLHCVAPKP ENFGTELMAP PPNSSKPEMK NSESFIQRAL FPITLKFEEV VYKIKQETKG MCCGGPSSTK EKTILNGVTG IVCPGEMLAM LGPSGSGKTT
101: LLTALGGRLS GKLSGKITYN SQPFSGAIKR RTGFVAQDDV LYPHLTVTET LLFTALLRLP QSLSREEKER HVEHVIAELG LNKCRNSMIG GPLFRGISGG
201: EKKRVSIGQE MLINPSLLLL DEPTSGLDST TALRILTTIK RLADGGRTVI TTIHQPSSRL YHMFDKVVLL SEGCPIYYGP ASTALEYFSS VGFSTSITIN
301: PADLLLDLAN GIGPDSKHAI EQGDSSEQEK KSVREALISA YDKNISTRLK TELCSSDTNN YSYAKDVSTR NGVKSEHWCT SWGYQFKVLL LRGLKERRYE
401: TFNKLRIFQV VSVAFLAGLL WWHTPTSHIE DRIAMVFFFA VFWGFYPLYN AVFTFPQERR MLIKERSSGM YRLSSYFLAK TVGDLPLELA LPTAFTFILY
501: WMGGLKANPA TFILSLLVVL YSVLVSQSLG LAYGAMLMDV KQATTLASVT TLVFLIAGGY YIQQIPPFIV WLKYLSYSYY CYKLLLGVQY NDNDYYECSK
601: GVYCQVAEFP AIKSIGLNNM WMDVFIMALM LVGYRLIAYL ALNRVR

Best Arabidopsis Sequence Match ( AT1G31770.1 )
(BLAST)

001: MPQNCIAPRP EEDGGVMVQG LPDMSDTQSK SVLAFPTITS QPGLQMSMYP ITLKFEEVVY KVKIEQTSQC MGSWKSKEKT ILNGITGMVC PGEFLAMLGP
101: SGSGKTTLLS ALGGRLSKTF SGKVMYNGQP FSGCIKRRTG FVAQDDVLYP HLTVWETLFF TALLRLPSSL TRDEKAEHVD RVIAELGLNR CTNSMIGGPL
201: FRGISGGEKK RVSIGQEMLI NPSLLLLDEP TSGLDSTTAH RIVTTIKRLA SGGRTVVTTI HQPSSRIYHM FDKVVLLSEG SPIYYGAASS AVEYFSSLGF
301: STSLTVNPAD LLLDLANGIP PDTQKETSEQ EQKTVKETLV SAYEKNISTK LKAELCNAES HSYEYTKAAA KNLKSEQWCT TWWYQFTVLL QRGVRERRFE
401: SFNKLRIFQV ISVAFLGGLL WWHTPKSHIQ DRTALLFFFS VFWGFYPLYN AVFTFPQEKR MLIKERSSGM YRLSSYFMAR NVGDLPLELA LPTAFVFIIY
501: WMGGLKPDPT TFILSLLVVL YSVLVAQGLG LAFGALLMNI KQATTLASVT TLVFLIAGGY YVQQIPPFIV WLKYLSYSYY CYKLLLGIQY TDDDYYECSK
601: GVWCRVGDFP AIKSMGLNNL WIDVFVMGVM LVGYRLMAYM ALHRVKLR

Arabidopsis Description

ABCG14ABC transporter G family member 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6W5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.