Factsheet for PGSC0003DMT400062852

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113690.1.1	Tomato	plastid	95.92	96.35
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	70.05	73.84
KRG89682	Soybean	cytosol, nucleus, peroxisome	70.5	71.04
KRH50602	Soybean	plastid	69.89	70.53
Bra002234.1-P	Field mustard	cytosol	49.77	68.54
CDY13996	Canola	plasma membrane	49.17	67.85
GSMUA_Achr2P06780_001	Banana	cytosol, peroxisome, plasma membrane, plastid	58.7	66.32
AT5G19410.2	Thale cress	plastid	62.48	65.24
CDX92533	Canola	plastid	62.03	65.18
TraesCS1B01G252600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	54.16	54.82
TraesCS1D01G240600.1	Wheat	plasma membrane	54.01	54.67
HORVU1Hr1G056890.2	Barley	cytosol	53.71	54.2
TraesCS1A01G240500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	53.56	54.13
KXG21900	Sorghum	cytosol, peroxisome, plasma membrane	52.8	50.0
Zm00001d038068_P001	Maize	cytosol, peroxisome, plasma membrane	52.34	49.86
Os05t0384600-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	50.08	49.04
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	42.81	47.48
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	41.6	45.23
PGSC0003DMT400032370	Potato	plasma membrane	40.85	43.55
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	39.49	40.72
PGSC0003DMT400029838	Potato	extracellular	31.62	30.07
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	32.22	29.42
PGSC0003DMT400061466	Potato	plasma membrane	32.98	29.42
PGSC0003DMT400039671	Potato	plasma membrane	24.36	28.96
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	31.47	28.73
PGSC0003DMT400039676	Potato	plasma membrane	25.72	27.03
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	24.96	26.92
PGSC0003DMT400084876	Potato	cytosol	29.5	26.75
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	26.02	26.63
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	26.48	26.43
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	23.75	26.04
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	26.17	25.63
PGSC0003DMT400050007	Potato	cytosol	28.9	22.96
PGSC0003DMT400054994	Potato	plastid	23.0	20.94
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	22.09	20.19
PGSC0003DMT400002062	Potato	cytosol	23.0	20.0

Protein Annotations

EntrezGene:102604373	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1C9M6	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400024466	PGSC:PGSC0003DMG400024466
EnsemblPlants:PGSC0003DMT400062852	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF158	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295A523	RefSeq:XP_006344992.1	SEG:seg	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400024466]

Coordinates

chr3:+:53583860..53586179

Molecular Weight (calculated)

74146.1 Da

IEP (calculated)

8.380

GRAVY (calculated)

0.122

Length

661 amino acids

Sequence
(BLAST)

001: MASPCTTYHP SPGSPENDSM ILFSTSTSCS PTKESTITHS NSSSFNSSSP PPRQSSPDKT YELRIRNLSY TISPNGSIFS SLLMKKSTKP KTTILKSVSF
101: VAGCSEILAI VGPSGTGKST LLRVISGRVS DKEFDPKSVY LNDHAITTPV QLRNICGYVA QEDNLLPLLT VKETLMFSAK FRLRGMSSKE REERVESLMQ
201: ELGLDHVANN FVGDEENRGI SGGERKRVSI GVDMIHDPPI LLLDEPTSGL DSSSALQVIE LLSSMAKTKQ RTIVLSIHQP SYRILQYISN LLILSHGSVV
301: HYGSLQSLEE NISRMGYEIP IQLNPLEFAM EIISVLENQE PHFKYQSCSY LRWEEAIIQG TANKEVIDQG KIGAVSNKHC SSLFEIAVLC SRFWKIIYRT
401: KQLFLARTMQ ALVGGFGLGS VYIKMRNDEG AVAERLGLFA FSLSFLLSST VEALPIYLQE RRVIMKEASR GAYKISSYMI ANTIIFLPFL FAVAILFAVP
501: VYWIVGLNPS ITAFVFFTFV VWVIVLMASS LVLFLSAISP DFISGNSLIC TVLGAFFLFS GYFIPKECIP KYWLFMYYVS LYRYPLDAML TNEYWSLRHK
601: CFTWNDENQS ECLLTGNDVL KNRGLDKDTR WMNVGIMLAF FVFYRVICWL VLARKASKTT I

Best Arabidopsis Sequence Match ( AT5G19410.2 )
(BLAST)

001: MKKNNNTHTM ASCFHPSAMA TSHREEDSII LFSASNSPDE FSSASSSFSS SPLPTPNRYS LTVTNLSYTI NHTPILNSVS LAAESSKILA VVGPSGTGKS
101: TLLKIISGRV NHKALDPSSA VLMNNRKITD YNQLRRLCGF VPQDDDLLPL LTVKETLMYS AKFSLRDSTA KEREERVESL LSDLGLVLVQ DSFVGEGDEE
201: DRGVSGGERK RVSIAVEMIR DPPILLLDEP TSGLDSRNSL QVVELLATMA KSKQRTVLFS IHQPSYRILD YISDYLILSR GSVIHLGSLE HLEDSIAKLG
301: FQIPEQLNPI EFAMEIVESL RTFKPNSVAV VESSSMWPEN NENDGIISKK EAFRVLDVTE ISYLCSRFCK IIYRTKQLFL ARTMQAVVAG LGLGSVYTRL
401: KRDEEGVAER LGLFAFSLSF LLSSTVEALP IYLRERRVLM KESSRGSYRI SSYMIANTIA FVPFLFVVSL LFSIPVYWIV GLNPSIQAFS FFVLCVWLII
501: LMASSLVLFL SAVSPDFISG NSLICTVLGA FFLFSGYFIP KEKIPKPWMF MYYVSLYRYP LESMVVNEYW SMREECFSSG NMGCLMTGED VLKERGLDKD
601: TRWINVGIML AFFVFYRILC WGILLRKASK STH

Arabidopsis Description

ABC-2 type transporter family protein [Source:TAIR;Acc:AT5G19410]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.