Factsheet for TraesCS1D01G240600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G240500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	97.7	97.55
TraesCS1B01G252600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	96.32	96.32
HORVU1Hr1G056890.2	Barley	cytosol	95.87	95.57
Zm00001d038068_P001	Maize	cytosol, peroxisome, plasma membrane	81.01	76.22
KXG21900	Sorghum	cytosol, peroxisome, plasma membrane	80.55	75.36
Os05t0384600-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	76.11	73.63
GSMUA_Achr2P06780_001	Banana	cytosol, peroxisome, plasma membrane, plastid	55.74	62.22
Bra002234.1-P	Field mustard	cytosol	42.88	58.33
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.44	57.74
CDY13996	Canola	plasma membrane	42.27	57.62
AT5G19410.2	Thale cress	plastid	53.29	54.98
KRG89682	Soybean	cytosol, nucleus, peroxisome	54.82	54.57
CDX92533	Canola	plastid	52.53	54.53
KRH50602	Soybean	plastid	54.52	54.35
Solyc03g113690.1.1	Tomato	plastid	54.67	54.26
PGSC0003DMT400062852	Potato	plastid	54.67	54.01
TraesCS3D01G231500.1	Wheat	mitochondrion, plastid	40.89	44.13
TraesCS7D01G337600.1	Wheat	cytosol, peroxisome, plasma membrane	42.11	41.54
TraesCS2D01G585300.1	Wheat	plasma membrane	38.44	37.24
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	33.23	31.36
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	32.62	31.28
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	32.31	27.91
TraesCS3D01G254600.1	Wheat	cytosol, peroxisome, plasma membrane	30.17	27.32
TraesCS4D01G092000.1	Wheat	plasma membrane	26.49	26.7
TraesCS7D01G067300.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.19	24.89
TraesCS7D01G375300.1	Wheat	cytosol, peroxisome, plasma membrane	24.66	24.28
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	31.09	24.14
TraesCS3D01G019000.1	Wheat	golgi	22.05	21.62
TraesCS5D01G211000.1	Wheat	cytosol	28.64	21.25
TraesCS4D01G271500.1	Wheat	plastid	24.35	21.14

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF158
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G240600	EnsemblPlants:TraesCS1D01G240600.1	SEG:seg

Description

No Description!

Coordinates

chr1D:-:330542974..330544935

Molecular Weight (calculated)

70688.8 Da

IEP (calculated)

8.244

GRAVY (calculated)

0.269

Length

653 amino acids

Sequence
(BLAST)

001: MDQDLSSELD PALLLSTSAS SSSPQDSASP SFSFYPPSPP EYTLTVTNLS CPAPRRANGA LLPFLPSFSA APAPAAEGLL NSVSFTASSS SILAVVGPSG
101: AGKSTLLRIL SGRGTGSEIT KPPTVCINGH AVTSRAQLRR TCGFVTQDDN LLPLLTVRET ILFAARFRLG SSVTAREQHE RVEALMQELR LSEVADSYVG
201: GGGGEAMSSS RGVSGGERKR VSIAVDMVHD PPVLLLDEPT SGLDSRSAMD VLALLHEVAR ARRQVVVLSI HQPSYRMLGY ISSLLLLSRG AVAHCGSLRS
301: LEDALARLGH KIPAQLNPLE LAMEVTEQLQ ADRAKFAELR DNDQYEEERE SPGVGNGSLQ VPEHGYRSRA VEVAALTVRC WRTMYRTQQL FAARAAQAVV
401: GGLGLGSVFF RVRADPDGLA LRLGLFAFSL SFLLSSTVEA LPILLHERRV LMREASRRAY RLSSYVVANA LVFAPCLLAV AVLFSAPVYW LVGLRASLAA
501: FGFFVLAVWL IVLMASSLVL FLSAVSPDFI LGNSLICIFL GVFFLFSGYF IPKESIPRYW AFMYYVSMYR YPLDLLLINE YGGSARDKCV AWVGGDAMNG
601: DGVCLSTGGD VLRGRGVDEG MRWVNVGVML GFFLVYRIMC WAVLVRRASK TTL

Best Arabidopsis Sequence Match ( AT5G19410.2 )
(BLAST)

001: MKKNNNTHTM ASCFHPSAMA TSHREEDSII LFSASNSPDE FSSASSSFSS SPLPTPNRYS LTVTNLSYTI NHTPILNSVS LAAESSKILA VVGPSGTGKS
101: TLLKIISGRV NHKALDPSSA VLMNNRKITD YNQLRRLCGF VPQDDDLLPL LTVKETLMYS AKFSLRDSTA KEREERVESL LSDLGLVLVQ DSFVGEGDEE
201: DRGVSGGERK RVSIAVEMIR DPPILLLDEP TSGLDSRNSL QVVELLATMA KSKQRTVLFS IHQPSYRILD YISDYLILSR GSVIHLGSLE HLEDSIAKLG
301: FQIPEQLNPI EFAMEIVESL RTFKPNSVAV VESSSMWPEN NENDGIISKK EAFRVLDVTE ISYLCSRFCK IIYRTKQLFL ARTMQAVVAG LGLGSVYTRL
401: KRDEEGVAER LGLFAFSLSF LLSSTVEALP IYLRERRVLM KESSRGSYRI SSYMIANTIA FVPFLFVVSL LFSIPVYWIV GLNPSIQAFS FFVLCVWLII
501: LMASSLVLFL SAVSPDFISG NSLICTVLGA FFLFSGYFIP KEKIPKPWMF MYYVSLYRYP LESMVVNEYW SMREECFSSG NMGCLMTGED VLKERGLDKD
601: TRWINVGIML AFFVFYRILC WGILLRKASK STH

Arabidopsis Description

ABC-2 type transporter family protein [Source:TAIR;Acc:AT5G19410]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.