Factsheet for VIT_06s0009g03380.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50602	Soybean	plastid	75.6	72.37
KRG89682	Soybean	cytosol, nucleus, peroxisome	75.44	72.1
PGSC0003DMT400062852	Potato	plastid	73.84	70.05
Solyc03g113690.1.1	Tomato	plastid	73.05	69.6
Bra002234.1-P	Field mustard	cytosol	51.83	67.71
CDY13996	Canola	plasma membrane	51.52	67.43
GSMUA_Achr2P06780_001	Banana	cytosol, peroxisome, plasma membrane, plastid	62.68	67.18
AT5G19410.2	Thale cress	plastid	65.07	64.45
CDX92533	Canola	plastid	64.27	64.07
TraesCS1D01G240600.1	Wheat	plasma membrane	57.74	55.44
HORVU1Hr1G056890.2	Barley	cytosol	57.89	55.42
TraesCS1B01G252600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	57.58	55.28
TraesCS1A01G240500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	56.94	54.59
KXG21900	Sorghum	cytosol, peroxisome, plasma membrane	56.78	51.0
Zm00001d038068_P001	Maize	cytosol, peroxisome, plasma membrane	56.3	50.86
Os05t0384600-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	52.47	48.74
VIT_16s0050g01620.t01	Wine grape	cytosol	44.02	46.23
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	43.06	45.53
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	42.9	43.88
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.58	42.05
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	33.17	28.26
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.75	27.93
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.38	27.18
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.75	26.48
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.91	25.89
VIT_17s0000g02200.t01	Wine grape	cytosol	29.03	25.82
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.95	25.45
VIT_19s0015g00960.t01	Wine grape	peroxisome	25.84	23.62
VIT_08s0032g00790.t01	Wine grape	plastid	27.11	22.73
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.79	21.65
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	22.81	19.62

Protein Annotations

EntrezGene:100243136	wikigene:100243136	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM478890	ProteinID:CAN68542	ProteinID:CAN68542.1	ProteinID:CCB49049
ProteinID:CCB49049.1	UniProt:F6HA41	EMBL:FN595504	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100243136	wikigene:LOC100243136	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF158
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00021095AC	ArrayExpress:VIT_06s0009g03380	EnsemblPlantsGene:VIT_06s0009g03380
EnsemblPlants:VIT_06s0009g03380.t01	RefSeq:XP_002276041	RefSeq:XP_002276041.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:16610144..16612096

Molecular Weight (calculated)

71250.8 Da

IEP (calculated)

8.494

GRAVY (calculated)

0.092

Length

627 amino acids

Sequence
(BLAST)

001: MAACFQQPAQ LEDDSTVLFS NSDSHEGSTS PSSSFYHSPP HDHQSKTTYR LTVKTLSHTI YPVQSMPISF CRPWKKPKPI NILKGVSFTA KSSEILAIVG
101: PSGTGKSTLL RIISGRVKNE EFDPKSILLN DHPITSPAQL RKICGFVAQE DNLLPLLTVK ETLMFSAKFR LREMSGKEKE ERVDSLMQEL GLVHVADSFV
201: GDEENRGISG GERKRVSIGV DMIHDPPILL LDEPTSGLDS TSALQVIELL SSMARAKHRT IVLSIHQPSY RLLQYISKFL ILSRGSVVHI GSLELLEEKI
301: DKMGFKIPLQ LNPLEFAMEI IYSLEDSNPN SYHSDIEDKK PSSYSAWPEE EVGRIQKQND GSQMGNHYLW SFFEIMFLCS RFWKIIYRTK QLFLARTMQA
401: LVGGFGLGSV YIKVRKDEGG IAERLGLFAF SLSFLLSSTV EALPIYLQER RVLMRESSRG AYRISSYMIA NTIIFLPFLF TVAILFAVPV YWLVGLNPSI
501: AAFTFFTFVV WLIVMMASSL VLFLSAVSPD FISGNSLICT VLGAFFLFSG YFIPKESIPR YWLFMYYVSL YRYPLDSLLI NEYWSMKGEW LDKDTRWMNV
601: GIMFGFFIFY RLLCWIILSR RASKTTI

Best Arabidopsis Sequence Match ( AT5G19410.2 )
(BLAST)

001: MKKNNNTHTM ASCFHPSAMA TSHREEDSII LFSASNSPDE FSSASSSFSS SPLPTPNRYS LTVTNLSYTI NHTPILNSVS LAAESSKILA VVGPSGTGKS
101: TLLKIISGRV NHKALDPSSA VLMNNRKITD YNQLRRLCGF VPQDDDLLPL LTVKETLMYS AKFSLRDSTA KEREERVESL LSDLGLVLVQ DSFVGEGDEE
201: DRGVSGGERK RVSIAVEMIR DPPILLLDEP TSGLDSRNSL QVVELLATMA KSKQRTVLFS IHQPSYRILD YISDYLILSR GSVIHLGSLE HLEDSIAKLG
301: FQIPEQLNPI EFAMEIVESL RTFKPNSVAV VESSSMWPEN NENDGIISKK EAFRVLDVTE ISYLCSRFCK IIYRTKQLFL ARTMQAVVAG LGLGSVYTRL
401: KRDEEGVAER LGLFAFSLSF LLSSTVEALP IYLRERRVLM KESSRGSYRI SSYMIANTIA FVPFLFVVSL LFSIPVYWIV GLNPSIQAFS FFVLCVWLII
501: LMASSLVLFL SAVSPDFISG NSLICTVLGA FFLFSGYFIP KEKIPKPWMF MYYVSLYRYP LESMVVNEYW SMREECFSSG NMGCLMTGED VLKERGLDKD
601: TRWINVGIML AFFVFYRILC WGILLRKASK STH

Arabidopsis Description

ABC-2 type transporter family protein [Source:TAIR;Acc:AT5G19410]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.