Factsheet for VIT_18s0166g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P34440_001	Banana	plasma membrane	52.19	71.18
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	59.15	63.57
PGSC0003DMT400002062	Potato	cytosol	61.6	62.89
VIT_08s0032g00790.t01	Wine grape	plastid	58.51	60.7
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	38.53	47.99
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	39.69	46.88
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	38.66	44.38
VIT_19s0015g00960.t01	Wine grape	peroxisome	37.24	42.13
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.57	41.57
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	22.16	28.06
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	20.88	27.32
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	21.65	26.79
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	21.65	26.46
VIT_17s0000g02200.t01	Wine grape	cytosol	22.81	25.11
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	23.32	24.59
VIT_16s0050g01620.t01	Wine grape	cytosol	18.43	23.95
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	22.68	23.56
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	21.26	22.63

Protein Annotations

EntrezGene:100256491	wikigene:100256491	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CBI35490	ProteinID:CBI35490.3	UniProt:D7TYB5	EMBL:FN596264
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
EntrezGene:LOC100256491	wikigene:LOC100256491	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF286	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI0001BE40D7	ArrayExpress:VIT_18s0166g00080	EnsemblPlantsGene:VIT_18s0166g00080	EnsemblPlants:VIT_18s0166g00080.t01	RefSeq:XP_002263430	RefSeq:XP_002263430.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:14023042..14027197

Molecular Weight (calculated)

86609.9 Da

IEP (calculated)

9.748

GRAVY (calculated)

-0.166

Length

776 amino acids

Sequence
(BLAST)

001: MEHSENVSGM YEAVSMPRTG KDSIFIPGRK SSSRSSSVVQ PQDDKDEAGI RIQKKRSFNR EKELASGKAV RKTKSLSSQF LVNIDELFNN VAGSFDEKGS
101: IPSRASSNGL GFSTPLAGSV LPLDDISDAS RLQIPRQKDS ATRQSRSAHE KDQDSCGWRK TNSKPTLPIY LKFEDVKYKV VTKGGKSSDE KHILHGITGS
201: VDPGEVLALM GPSGGGKTTL LNLLSGKVKT NSGRITYNDQ PYAKTLKHSR IGFVLQDDIV FPHLTVKETL TYAALLRLPN TLTRQQKKER VMDIISELDL
301: ERCQNTIIGG ALVRGISGGE RKRVCIGNEI LLNPSLLFLD EPTSGLDSTT ALRILQMLQN TAEAGKTVVT TIHQPSSRLF SMFDKLVLLG KGNSLYFGKA
401: SEAMLYFSSI GCSPLEAMNP AEFLIDLANG NISNKSVPSE LEDKYSPGRQ NFENEEGKPS PGEVHEYLVG AYEERVANLE KMKLLSPVLI DSVSEMQRRE
501: NSPEWGANWW QQFSILFRRG LKERRHEYLN GLRITQVIST AVILGLLWWH SDASSPKKLQ DQARLLFFIS VFWGFLPLFT AIFTFPQERA MLVKERSVDM
601: YRLSAYFVAR NTSDLPLDLI LPILFMLIVY FMAGLKPSFA AFSLTMLTVF LSILASQGLG MTIGAALMDV KKATTLASIT LMTFMLSGGF FIQEFPSFIS
701: WARHISFNYH TYRLLLKIQY SCSNSNYEEG PCNSPFIRGL KLNRSGMELG AMVAMCIGYR LLAYIFLRRM KLRTLT

Best Arabidopsis Sequence Match ( AT5G06530.2 )
(BLAST)

001: MSMEKPPLAS GLARTRSEQL YETVAADIRS PHGSMDANGV PATAPAAVGG GGTLSRKSSR RLMGMSPGRS SGAGTHIRKS RSAQLKLELE EVSSGAALSR
101: ASSASLGLSF SFTGFAMPPE EISDSKPFSD DEMIPEDIEA GKKKPKFQAE PTLPIFLKFR DVTYKVVIKK LTSSVEKEIL TGISGSVNPG EVLALMGPSG
201: SGKTTLLSLL AGRISQSSTG GSVTYNDKPY SKYLKSKIGF VTQDDVLFPH LTVKETLTYA ARLRLPKTLT REQKKQRALD VIQELGLERC QDTMIGGAFV
301: RGVSGGERKR VSIGNEIIIN PSLLLLDEPT SGLDSTTALR TILMLHDIAE AGKTVITTIH QPSSRLFHRF DKLILLGRGS LLYFGKSSEA LDYFSSIGCS
401: PLIAMNPAEF LLDLANGNIN DISVPSELDD RVQVGNSGRE TQTGKPSPAA VHEYLVEAYE TRVAEQEKKK LLDPVPLDEE AKAKSTRLKR QWGTCWWEQY
501: CILFCRGLKE RRHEYFSWLR VTQVLSTAVI LGLLWWQSDI RTPMGLQDQA GLLFFIAVFW GFFPVFTAIF AFPQERAMLN KERAADMYRL SAYFLARTTS
601: DLPLDFILPS LFLLVVYFMT GLRISPYPFF LSMLTVFLCI IAAQGLGLAI GAILMDLKKA TTLASVTVMT FMLAGGFFVK KVPVFISWIR YLSFNYHTYK
701: LLLKVQYQDF AVSINGMRID NGLTEVAALV VMIFGYRLLA YLSLRQMKIV T

Arabidopsis Description

ABCG22ABC transporter G family member 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93YS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.