Factsheet for VIT_18s0072g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	69.13	76.12
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	32.98	75.52
KRG91794	Soybean	cytosol, peroxisome, plasma membrane, plastid	71.39	70.75
KRH34992	Soybean	cytosol, plasma membrane, plastid	71.23	70.7
Solyc11g018690.1.1	Tomato	cytosol	36.3	70.47
CDX68292	Canola	cytosol, peroxisome, plasma membrane	61.45	62.77
Bra003903.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.3	62.62
GSMUA_Achr6P25480_001	Banana	cytosol, peroxisome, plastid	60.54	62.33
Bra016095.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.9	62.18
CDY36671	Canola	plasma membrane	32.23	61.85
Bra007999.1-P	Field mustard	plasma membrane	60.99	61.46
GSMUA_Achr11P...	Banana	plasma membrane	55.87	61.22
AT1G71960.1	Thale cress	cytosol, peroxisome, plasma membrane	60.69	60.88
CDX72849	Canola	cytosol, peroxisome, plasma membrane	62.35	60.7
Os11t0177400-01	Rice	plasma membrane	42.32	59.41
CDX82199	Canola	cytosol, peroxisome, plasma membrane, plastid	60.99	59.21
CDY03668	Canola	plasma membrane	60.99	59.04
CDX96365	Canola	plasma membrane	33.73	58.03
CDX96366	Canola	cytosol	31.78	57.18
CDY36670	Canola	cytosol	31.17	57.02
Zm00001d053049_P001	Maize	plasma membrane	54.07	56.45
HORVU4Hr1G018800.7	Barley	plastid	53.77	55.61
Zm00001d004762_P001	Maize	plasma membrane	52.86	55.54
TraesCS4D01G092000.1	Wheat	plasma membrane	54.07	55.4
TraesCS4B01G095200.1	Wheat	plastid	53.61	55.28
TraesCS4A01G216900.1	Wheat	plasma membrane, plastid	53.77	55.18
KXG27901	Sorghum	plasma membrane, plastid	53.77	55.01
GSMUA_Achr9P08630_001	Banana	cytosol, peroxisome, plasma membrane	54.97	53.83
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.14	50.24
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.89	47.04
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.48	45.97
VIT_08s0032g00790.t01	Wine grape	plastid	43.67	38.77
VIT_19s0015g00960.t01	Wine grape	peroxisome	37.2	36.01
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.57	35.57
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	25.3	27.41
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	25.45	26.95
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	23.8	26.64
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	25.45	26.61
VIT_17s0000g02200.t01	Wine grape	cytosol	26.2	24.68
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.56	24.5
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	26.81	24.42
VIT_16s0050g01620.t01	Wine grape	cytosol	21.84	24.29
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.81	24.18

Protein Annotations

EntrezGene:100248658	wikigene:100248658	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	ProteinID:CCB44839	ProteinID:CCB44839.1	UniProt:F6GY25	EMBL:FN594968	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
GO:GO:0080168	InterPro:IPR003439	EntrezGene:LOC100248658	wikigene:LOC100248658	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF01061	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF225	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI00019855BE	ArrayExpress:VIT_18s0072g01220	EnsemblPlantsGene:VIT_18s0072g01220	EnsemblPlants:VIT_18s0072g01220.t01	RefSeq:XP_002268373
RefSeq:XP_002268373.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:20935126..20942470

Molecular Weight (calculated)

72844.5 Da

IEP (calculated)

9.352

GRAVY (calculated)

0.195

Length

664 amino acids

Sequence
(BLAST)

001: MPVMGGGDAP NGGASEGSER VKPSSQDSRD LNFLMASCYP ISLKFIDICY RVKLEKKKSR GGLCRPMLGG PTKSSDRGST TETIQEKTIL NGVTGMACPG
101: EILAVLGPSG SGKSTLLNAL AGRIQGHCFT GTVLANGRKL TKPVLRRTGF VTQDDILYPH LTVRETLIFC SLLRLPNTLT KQEKISLADS VIAELGLAKC
201: ENTIIGNSFI RGVSGGERKR VSIAHEMLIN PSLLILDEPT SGLDSTSAYR LVSTLVSLAN KGKTIVTSMH QPSSRVYQMF HSVLVLSEGR CLYFGKGSQA
301: MSYFETVGFT PSFPMNPADF LLDLANGVCH LDGVSEREKP NIKQALVSSY NSLLAPKVKD ACNMDTNVTA PKETVSLASK ECRRRCSYSG LSTWFNQFSI
401: LLQRGLKERK HESFNSLRVF QVIAAALLAG LMWWHSDFLD IQDRLGLLFF IAIFWGVFPS FNSVFAFPQE RAIFMKERAS GMYTLSSYFM ARIVGDMPME
501: LILPMVFLTV AYWMAGLKPE VGAFLLTLVI LLGYVLVSQG LGLALGAAIM DAKKASTMVT VTMLAFVLTG GFYVHKMPSC MTWIKYISTT FYSYRLLINV
601: QYGEGKRISS LLGCSHHGIN RASCKFIEED IGGQISPAFC ITAMVFMFVG YRLLAYLALR CIKA

Best Arabidopsis Sequence Match ( AT1G71960.1 )
(BLAST)

001: MSAFDGVENQ MNGPDSSPRL SQDPREPRSL LSSSCFPITL KFVDVCYRVK IHGMSNDSCN IKKLLGLKQK PSDETRSTEE RTILSGVTGM ISPGEFMAVL
101: GPSGSGKSTL LNAVAGRLHG SNLTGKILIN DGKITKQTLK RTGFVAQDDL LYPHLTVRET LVFVALLRLP RSLTRDVKLR AAESVISELG LTKCENTVVG
201: NTFIRGISGG ERKRVSIAHE LLINPSLLVL DEPTSGLDAT AALRLVQTLA GLAHGKGKTV VTSIHQPSSR VFQMFDTVLL LSEGKCLFVG KGRDAMAYFE
301: SVGFSPAFPM NPADFLLDLA NGVCQTDGVT EREKPNVRQT LVTAYDTLLA PQVKTCIEVS HFPQDNARFV KTRVNGGGIT TCIATWFSQL CILLHRLLKE
401: RRHESFDLLR IFQVVAASIL CGLMWWHSDY RDVHDRLGLL FFISIFWGVL PSFNAVFTFP QERAIFTRER ASGMYTLSSY FMAHVLGSLS MELVLPASFL
501: TFTYWMVYLR PGIVPFLLTL SVLLLYVLAS QGLGLALGAA IMDAKKASTI VTVTMLAFVL TGGYYVNKVP SGMVWMKYVS TTFYCYRLLV AIQYGSGEEI
601: LRMLGCDSKG KQGASAATSA GCRFVEEEVI GDVGMWTSVG VLFLMFFGYR VLAYLALRRI KH

Arabidopsis Description

ABCG25ABC transporter G family member 25 [Source:UniProtKB/Swiss-Prot;Acc:Q84TH5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.