Factsheet for VIT_16s0050g01620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35226	Soybean	cytosol, mitochondrion, plasma membrane	60.8	77.23
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	75.88	76.01
Solyc03g007690.1.1	Tomato	plastid	75.38	75.38
KRG91599	Soybean	cytosol, plastid	71.36	74.61
CDX94418	Canola	plastid	70.02	72.95
CDX89396	Canola	plasma membrane	69.68	72.6
Bra013916.1-P	Field mustard	plastid	69.51	72.43
AT5G52860.1	Thale cress	cytosol, nucleus, plasma membrane, plastid	71.19	72.16
AT4G25750.1	Thale cress	plasma membrane	69.51	71.92
CDY27043	Canola	plastid	70.18	71.14
Bra022614.1-P	Field mustard	plastid	70.02	70.97
CDX96159	Canola	plastid	69.18	70.12
GSMUA_Achr7P10690_001	Banana	cytosol	51.09	65.45
GSMUA_Achr6P05760_001	Banana	cytosol, nucleus, plastid	59.8	63.86
Zm00001d044895_P001	Maize	cytosol, peroxisome, plasma membrane	58.63	56.63
EES14035	Sorghum	cytosol, peroxisome, plasma membrane	59.3	56.01
Os06t0503100-01	Rice	cytosol, peroxisome, plasma membrane	45.56	55.97
HORVU7Hr1G081250.1	Barley	mitochondrion	57.96	52.42
TraesCS7D01G337600.1	Wheat	cytosol, peroxisome, plasma membrane	58.12	52.42
TraesCS7A01G342000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	57.96	52.27
TraesCS7B01G240900.1	Wheat	cytosol, peroxisome, plasma membrane	57.29	51.66
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	44.05	44.35
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	46.23	44.02
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	43.22	42.09
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.21	39.69
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	34.0	27.18
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	33.17	26.9
VIT_17s0000g02200.t01	Wine grape	cytosol	30.49	25.82
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	24.62	23.6
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	25.96	22.93
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	25.13	22.83
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	24.29	21.84
VIT_19s0015g00960.t01	Wine grape	peroxisome	24.79	21.57
VIT_08s0032g00790.t01	Wine grape	plastid	24.96	19.92
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	23.95	19.62
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	23.95	18.43

Protein Annotations

EntrezGene:100245835	wikigene:100245835	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM458094	ProteinID:CAN67885	ProteinID:CAN67885.1	ProteinID:CCB47810
ProteinID:CCB47810.1	UniProt:F6H6M1	EMBL:FN595243	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100245835	wikigene:LOC100245835	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF290
SMART:SM00382	SUPFAM:SSF52540	TIGR:TC53270	TMHMM:TMhelix	UniParc:UPI0001985BE9	ArrayExpress:VIT_16s0050g01620
EnsemblPlantsGene:VIT_16s0050g01620	EnsemblPlants:VIT_16s0050g01620.t01	unigene:Vvi.7882	RefSeq:XP_002276766	RefSeq:XP_002276766.1	SEG:seg

Description

No Description!

Coordinates

chr16:-:18530207..18532284

Molecular Weight (calculated)

66962.2 Da

IEP (calculated)

9.737

GRAVY (calculated)

0.323

Length

597 amino acids

Sequence
(BLAST)

001: MEDHSSLPPP PHKTYRITAS SISYTKPTTN NYTIVPTFLF QPCTTTPPTY ILRDICLTAY PSQVLAIVGP SGAGKSTLLD ILAARTSPTS GSLLLNSSPL
101: NRSSFRKLSA YVPQHDACLP QLTVSETFAF AASLLVPKSS KIAIIVASLL SELRLTHLAH TRLAHGLSGG ERRRVSIGLS LLHDPAVLLL DEPTSGLDSN
201: SAFNVMQTLQ SIAQSRHRTV ILSIHQPSFK ILSTIDKVLL LSKGTVIHHG TLSSLETFLL SHGFTVPSQL NSLEYAMEIL SQLHEHKPLT PPSLPPSPEI
301: PEISPSNHSG SMIRYRSSRL HEVLALYNRF WKIVYRTRQL LLVNALEALG VGLVLGTIYI NIGFDKQGME KRLGLFAFTL TFLLSSTTET LPIFINERPI
401: LLRETSSGVY RLSSYLIANT LVFLPYLLAI AIIYSVSVYF LVGLCATWQA FAYFVLVIWV IVLMANSFVL FLSSVAPNYI AGTSLVTIFL GAFFLFSGYF
501: ISKDSMPKYW LFMHFFSMYK YALDAFLINE YSCLVSRCLL WYEENKTCMA TGRDVLQKKG LHERQRWTNI YMLIGFFFFY RVLCFLVLIR RVRRSKN

Best Arabidopsis Sequence Match ( AT5G52860.1 )
(BLAST)

001: MEIPPSPPPE TAAYTLTTSS ISYTIPKTSL SLLRFPATEP PSFILRNITL TAHPTEILAV VGPSGAGKST LLDILASKTS PTSGSILLNS IPINPSSYRK
101: ISSYVPQHDS FFPLLTVSET FSFAACLLLP NPSIVSETVT SLLSELNLTH LSHTRLAQGL SGGERRRVSI GLSLLHDPCF LLLDEPTSGL DSKSAFDVIH
201: ILKSIAVSRQ RTVILSIHQP SFKILSIIDR LLLLSKGTVV YHGRLDSLEG FLLFKGFTVP PQLNSLEYAM EILQELRESD GNTDATALPS IENRKQREKQ
301: SIVRYRKSRI TEISLLARRF WKIIYRTRQL LLTNALEALV VGLVLGTIYI NIGIGKAGIE KRFGMFAFTL TFLLSSTTET LPIFINERPI LLRETSSGIY
401: RLSSHILANT LVFLPYLFVI SIIYSVSVYF LIGLCPTWQA FGYFVLVIWI ILLMANSFVL FLSSLAPNYI TGTSLVTILL AAFFLFSGYF ISKESLPKYW
501: LFMYFFSMYK YALDALLINE YSCLASKCLV WLEEAQTKIC MVTGGDVLKK KGLHEKQRWF NVYVLLGFFV LYRVLCFLAL LRRVSGSKR

Arabidopsis Description

ABCG8ABC transporter G family member 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX5]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.