CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044895_P001	Maize	cytosol, peroxisome, plasma membrane	89.87	91.91
Os06t0503100-01	Rice	cytosol, peroxisome, plasma membrane	65.98	85.8
TraesCS7D01G337600.1	Wheat	cytosol, peroxisome, plasma membrane	82.44	78.7
TraesCS7A01G342000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	82.44	78.7
HORVU7Hr1G081250.1	Barley	mitochondrion	81.8	78.33
TraesCS7B01G240900.1	Wheat	cytosol, peroxisome, plasma membrane	81.96	78.25
GSMUA_Achr7P10690_001	Banana	cytosol	51.27	69.53
GSMUA_Achr6P05760_001	Banana	cytosol, nucleus, plastid	60.13	67.98
VIT_16s0050g01620.t01	Wine grape	cytosol	56.01	59.3
CDX94418	Canola	plastid	52.69	58.12
KRH35226	Soybean	cytosol, mitochondrion, plasma membrane	43.04	57.87
CDX89396	Canola	plasma membrane	52.22	57.59
Bra013916.1-P	Field mustard	plastid	52.06	57.42
KRG91599	Soybean	cytosol, plastid	51.27	56.74
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	53.32	56.54
Solyc03g007690.1.1	Tomato	plastid	53.16	56.28
CDY27043	Canola	plastid	51.9	55.69
Bra022614.1-P	Field mustard	plastid	51.74	55.52
AT4G25750.1	Thale cress	plasma membrane	50.47	55.29
AT5G52860.1	Thale cress	cytosol, nucleus, plasma membrane, plastid	51.42	55.18
CDX96159	Canola	plastid	51.42	55.18
EES03276	Sorghum	mitochondrion	40.98	42.32
KXG21900	Sorghum	cytosol, peroxisome, plasma membrane	42.09	38.11
EES01897	Sorghum	cytosol, plasma membrane, plastid	40.35	37.89
EES17614	Sorghum	cytosol, peroxisome, vacuole	35.28	31.41
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	33.7	29.83
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	33.07	28.05
EES03493	Sorghum	cytosol, peroxisome, plasma membrane	31.96	27.6
KXG27901	Sorghum	plasma membrane, plastid	26.42	25.73
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	32.28	25.63
OQU76682	Sorghum	mitochondrion, plasma membrane	23.58	25.04
KXG20331	Sorghum	cytosol, peroxisome, plasma membrane	25.16	23.91
OQU76684	Sorghum	nucleus, peroxisome, plasma membrane	24.68	23.53
OQU76683	Sorghum	nucleus, peroxisome, plasma membrane	24.53	23.38
EES13415	Sorghum	plastid	26.58	22.43
EES00402	Sorghum	endoplasmic reticulum, golgi, plasma membrane	23.26	22.14
EER92832	Sorghum	plasma membrane	25.16	20.84
OQU80214	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	28.32	20.41

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	EntrezGene:8056921	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	UniProt:C5YMQ7	EnsemblPlants:EES14035	ProteinID:EES14035	ProteinID:EES14035.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF290
SMART:SM00382	EnsemblPlantsGene:SORBI_3007G162400	SUPFAM:SSF52540	unigene:Sbi.9139	TMHMM:TMhelix	UniParc:UPI0001A87B3F
RefSeq:XP_002444540.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:59653952..59655850

Molecular Weight (calculated)

67039.0 Da

IEP (calculated)

8.712

GRAVY (calculated)

0.358

Length

632 amino acids

Sequence
(BLAST)

001: MATTTTTVTE EPNNADDDAS SPPSPTTSPP PNNKKKVTYE LAARNIYYAK PAAAPRSLVA HLLKPCGASP APPDYILRDV SLTARAGEIL AVVGPSGAGK
101: STLLDILATR TAPAQGRLLL NGAPLRSTSS FRRLSAHVPQ ADVALDLLTV SETFAFAASL LRPDSASAAS AAVAALLDDL RLAHVAHTRV SPARLSGGER
201: RRVSIGLVLL RDPAVLLLDE PTSGLDSSSA HVVVSCLRAV AAARGTTVVL SIHQPSARLL SAVDCLLLLS RGTVLHHGSL ASLDAALLSH GLVVPAQLNP
301: LEFALEVLDQ LPHPTTPSTP EPKTTKTTQE LNSPSSSSST GSCSPSSRLH ELVVLYKRAW KVVYRSKQLL LTNFLEAVLV GTLLGTIYIH AGYGEAGAHK
401: RLGLFAFTLT FLLTSTTETL PTFVTERPIV LAETAAGLYR LSSHVAAATL VFLPYLLAVA LLYSVCVYFL VGLCSSAGAF AAFVLVVWAV VLTANSFVLF
501: VSSFAPDYIA GMSLVSVSLA GFFLFSGYFL SRGSMPSYWV FMHYASPYKY ALDALLANEY TCAANRCFGG VVGGGGAADG SECLETGRDV LVEKGLTAEE
601: RWTGVQVLFG FFLLYRVLYW VVLSRRASRA KR

Best Arabidopsis Sequence Match ( AT4G25750.1 )
(BLAST)

001: MESYTLSTSS ISYAKPLSPL LLTAEQPSFI LRNITLTSHP SQILAIIGPS GAGKSTLLDI LAARTSPTSG SILLNSVLIN PSSYRKISSY VPQHDTFFPL
101: LTVSETFTFS ASLLLPKNLS KVSSVVASLL KELNLTHLAH TRLGQGLSGG ERRRVSIGLS LLHDPEVLLL DEPTSGLDSK SAFDVVQILK SIATSRERIV
201: ILSIHQPSFK ILSLIDRVLL LSKGTIVYHG RLDLLEAFLL SKGFTVPSQL NSLEYAMEIL QNIRDPYENA NIALPDHCPE SKKQNQKQSI VRYKSSRITE
301: ISLLSSRFWK IIYRTRQLLL TNILESLVVG LVLGTIYLNI GTGKEGIRKR FGLFAFTLTF LLSSTTQTLP IFIDERPILL RETSSGLYRL SSHILANTLV
401: FLPYLLLIAI IYSVSLYFLV GLCFSWQALA YFVLVIWIIV LMANSFVLFL SSLAPNYIAG TSSVTILLAA FFLFSGYFIS KESLPKYWLF MYFFSMYKYA
501: LDALLINEYS CLHNKCLVWF EEASVNSCLV TGGDVLDKNG LHERQRWFNV YMLLGFFVLY RVLCFLVLLK RVSGSKR

Arabidopsis Description

ABCG4ABC transporter G family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW08]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.