Factsheet for PGSC0003DMT400053843

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007690.1.1	Tomato	plastid	97.99	97.82
VIT_16s0050g01620.t01	Wine grape	cytosol	76.01	75.88
KRH35226	Soybean	cytosol, mitochondrion, plasma membrane	57.38	72.77
KRG91599	Soybean	cytosol, plastid	67.62	70.58
CDX94418	Canola	plastid	66.61	69.28
Bra013916.1-P	Field mustard	plastid	66.11	68.76
CDX89396	Canola	plasma membrane	66.11	68.76
CDY27043	Canola	plastid	67.79	68.59
AT5G52860.1	Thale cress	cytosol, nucleus, plasma membrane, plastid	67.45	68.25
Bra022614.1-P	Field mustard	plastid	67.45	68.25
CDX96159	Canola	plastid	66.95	67.74
AT4G25750.1	Thale cress	plasma membrane	65.1	67.24
GSMUA_Achr7P10690_001	Banana	cytosol	51.17	65.45
GSMUA_Achr6P05760_001	Banana	cytosol, nucleus, plastid	59.23	63.15
Zm00001d044895_P001	Maize	cytosol, peroxisome, plasma membrane	56.38	54.37
EES14035	Sorghum	cytosol, peroxisome, plasma membrane	56.54	53.32
Os06t0503100-01	Rice	cytosol, peroxisome, plasma membrane	42.95	52.67
TraesCS7A01G342000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	55.7	50.15
HORVU7Hr1G081250.1	Barley	mitochondrion	55.2	49.85
TraesCS7D01G337600.1	Wheat	cytosol, peroxisome, plasma membrane	55.2	49.7
TraesCS7B01G240900.1	Wheat	cytosol, peroxisome, plasma membrane	54.7	49.24
PGSC0003DMT400062852	Potato	plastid	47.48	42.81
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	41.78	40.95
PGSC0003DMT400032370	Potato	plasma membrane	41.28	39.68
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	41.95	39.0
PGSC0003DMT400029838	Potato	extracellular	32.89	28.2
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	33.22	27.35
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	32.89	27.07
PGSC0003DMT400084876	Potato	cytosol	32.21	26.34
PGSC0003DMT400061466	Potato	plasma membrane	32.72	26.32
PGSC0003DMT400039671	Potato	plasma membrane	24.16	25.9
PGSC0003DMT400039676	Potato	plasma membrane	26.34	24.96
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	25.67	24.96
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	26.85	23.7
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	25.67	23.68
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	26.17	23.57
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	23.49	23.22
PGSC0003DMT400050007	Potato	cytosol	31.54	22.6
PGSC0003DMT400054994	Potato	plastid	24.66	20.25
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	23.66	19.5
PGSC0003DMT400002062	Potato	cytosol	23.99	18.82

Protein Annotations

EntrezGene:102598584	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1BVI9	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400020888	PGSC:PGSC0003DMG400020888
EnsemblPlants:PGSC0003DMT400053843	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF290	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296464F	RefSeq:XP_006362650.1	SEG:seg	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400020888]

Coordinates

chr3:+:49473786..49475646

Molecular Weight (calculated)

66402.6 Da

IEP (calculated)

9.591

GRAVY (calculated)

0.301

Length

596 amino acids

Sequence
(BLAST)

001: MEIESSPTSP SPPLKTYKLT ASSIGYSKST TISPALLFKP CETPPPINIL KDISFTAYPS QILAIVGPSG AGKSTLLDIL AAGTSPTSGT LLLNSLPLHS
101: PSTFRKLSAY VPQHDCSLPQ LTVSETFAFS ARLLNPKLND VSCIVDSLLA ELRLTHLAHT RLAHGLSGGE RRRVSIGLSL LHDPAILLLD EPTSGLDSNS
201: ALNVMQTLRS ITDSRQRTVL LSIHQPSFKI LATIDKILLL SKGTVVHHGT LSSLEEFLLE NGFTVPPQLN SLEYAMEMLS QLNEKKPITP ISSPPKNPTT
301: TPVPEAKTGE IKYRSSRFHE IAVLYSRFWK IIYRTKQLLL TNTLQALGVG LVLGTIYINI GFGKAGIEKR FGLFAFTLTF LLSSTTETLP IFINERPILL
401: RETSSGVYRL SSYLIANTLV FLPYSLVIAI LYSISLYFLV GLCYSWQAFT YFILTIWVIV LMANSFVLFL SSVAPNYIAG TSLVTLLLAG SFLFSGYFIT
501: KETMPKFWTM LHYLSMYKYG LDALLINEYS CLVAKCLIWY DEKNKVCMVS GSDVLDKRGL HERERWTNIY ILIGFFLFYR LLWLIVLIRR VSRSKK

Best Arabidopsis Sequence Match ( AT5G52860.1 )
(BLAST)

001: MEIPPSPPPE TAAYTLTTSS ISYTIPKTSL SLLRFPATEP PSFILRNITL TAHPTEILAV VGPSGAGKST LLDILASKTS PTSGSILLNS IPINPSSYRK
101: ISSYVPQHDS FFPLLTVSET FSFAACLLLP NPSIVSETVT SLLSELNLTH LSHTRLAQGL SGGERRRVSI GLSLLHDPCF LLLDEPTSGL DSKSAFDVIH
201: ILKSIAVSRQ RTVILSIHQP SFKILSIIDR LLLLSKGTVV YHGRLDSLEG FLLFKGFTVP PQLNSLEYAM EILQELRESD GNTDATALPS IENRKQREKQ
301: SIVRYRKSRI TEISLLARRF WKIIYRTRQL LLTNALEALV VGLVLGTIYI NIGIGKAGIE KRFGMFAFTL TFLLSSTTET LPIFINERPI LLRETSSGIY
401: RLSSHILANT LVFLPYLFVI SIIYSVSVYF LIGLCPTWQA FGYFVLVIWI ILLMANSFVL FLSSLAPNYI TGTSLVTILL AAFFLFSGYF ISKESLPKYW
501: LFMYFFSMYK YALDALLINE YSCLASKCLV WLEEAQTKIC MVTGGDVLKK KGLHEKQRWF NVYVLLGFFV LYRVLCFLAL LRRVSGSKR

Arabidopsis Description

ABCG8ABC transporter G family member 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX5]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.