Factsheet for PGSC0003DMT400052674

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053300.1.1	Tomato	cytosol	97.37	97.37
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	62.66	64.25
PGSC0003DMT400032370	Potato	plasma membrane	59.7	58.55
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	37.34	54.83
Zm00001d011350_P001	Maize	cytosol, peroxisome, plasma membrane	43.42	52.07
Zm00001d044476_P001	Maize	cytosol, peroxisome, plasma membrane	52.14	52.05
TraesCS3D01G231500.1	Wheat	mitochondrion, plastid	51.48	51.74
TraesCS3B01G251300.1	Wheat	plastid	51.48	51.74
TraesCS3A01G221400.1	Wheat	plastid	51.48	51.74
HORVU3Hr1G054160.1	Barley	plastid	51.48	51.48
EES03276	Sorghum	mitochondrion	51.48	51.14
Os01t0615500-00	Rice	plastid	51.15	50.73
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	46.88	44.46
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	40.95	41.78
PGSC0003DMT400062852	Potato	plastid	45.23	41.6
PGSC0003DMT400029838	Potato	extracellular	34.7	30.36
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	34.87	29.28
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	33.72	28.31
PGSC0003DMT400061466	Potato	plasma membrane	33.55	27.53
PGSC0003DMT400039671	Potato	plasma membrane	24.84	27.16
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	27.3	27.08
PGSC0003DMT400084876	Potato	cytosol	31.91	26.61
PGSC0003DMT400039676	Potato	plasma membrane	27.14	26.23
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	26.81	25.23
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	25.0	25.21
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	27.3	25.08
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	27.8	25.04
PGSC0003DMT400050007	Potato	cytosol	32.57	23.8
PGSC0003DMT400054994	Potato	plastid	27.47	23.0
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	26.15	21.99
PGSC0003DMT400002062	Potato	cytosol	26.64	21.32

Protein Annotations

EntrezGene:102580749	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1BTT8	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400020447	PGSC:PGSC0003DMG400020447
EnsemblPlants:PGSC0003DMT400052674	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF441	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295F7E2	RefSeq:XP_006348975.1	SEG:seg	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400020447]

Coordinates

chr7:+:50049590..50051416

Molecular Weight (calculated)

68622.8 Da

IEP (calculated)

8.640

GRAVY (calculated)

0.153

Length

608 amino acids

Sequence
(BLAST)

001: MEILPVKTSN SDRYKIEARN LSYKLPPKYN EFKWIGKKLA NNNKTSTYIL RNVSCEAKPG EITAVVGPSG AGKTTLLDIL AGNVGPSCVS GHVLVNDQPM
101: KPANFRRISG YVTQDEALFP LLTVEETLMY SARFRLRAGD DKAKDRVKKL LNELGLDHVA GLKIGRESSR TISGGEKRRV AIGVELVHDP AVVLLDEPTS
201: GLDSASAFHV MHLLKSMAKN HGKTIVLTIH QPGFRILELF DKAVLLSNGF VLHNGSLHLL EEKLKSTGHF IPHHVNVLEF AIDITDSLAE CLHSGDQSDI
301: EKCETEQESD NVLNKNTNKE VLYSNSPLKE VLILSQRFCR NIFRTKQLFL AKVIQALLVG LILGSIFFNA YNNNTKNLEL QSQVGFFAFS LTFLLSSNTE
401: ALPIFLEERR ILMRETSRGA YRISTYNIAN TIVFLPFLFI VALLYAIPVY WLVGLKYEFS SFAYYTLVSW MIFAMGNSFV AACSALVPNF LLGMSFIGCL
501: IGAFFLFSGY FISKESIPIF WLFVHYLSLF KYPFECFLIN EYGGESGKLK CIQKVDGVCL MYGEQLLTRY GLEESQKWSN IAIMLSFIFC YRFLCFLILW
601: YRSIRNKC

Best Arabidopsis Sequence Match ( AT1G53270.1 )
(BLAST)

001: MELPVKAPIP GGREISYRLE TKNLSYRIGG NTPKFSNLCG LLSEKEEKVI LKDVSCDARS AEITAIAGPS GAGKTTLLEI LAGKVSHGKV SGQVLVNGRP
101: MDGPEYRRVS GFVPQEDALF PFLTVQETLT YSALLRLKTK RKDAAAKVKR LIQELGLEHV ADSRIGQGSR SGISGGERRR VSIGVELVHD PNVILIDEPT
201: SGLDSASALQ VVTLLKDMTI KQGKTIVLTI HQPGFRILEQ IDRIVLLSNG MVVQNGSVYS LHQKIKFSGH QIPRRVNVLE YAIDIAGSLE PIRTQSCREI
301: SCYGHSKTWK SCYISAGGEL HQSDSHSNSV LEEVQILGQR SCKNIFRTKQ LFTTRALQAS IAGLILGSIY LNVGNQKKEA KVLRTGFFAF ILTFLLSSTT
401: EGLPIFLQDR RILMRETSRR AYRVLSYVLA DTLIFIPFLL IISMLFATPV YWLVGLRREL DGFLYFSLVI WIVLLMSNSF VACFSALVPN FIMGTSVISG
501: LMGSFFLFSG YFIAKDRIPV YWEFMHYLSL FKYPFECLMI NEYRGDVFLK QQDLKESQKW SNLGIMASFI VGYRVLGFFI LWYRCYRTRS

Arabidopsis Description

ABCG10ABCG10 [Source:UniProtKB/TrEMBL;Acc:A0A178WBC4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.