Factsheet for PGSC0003DMT400002293

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	47.6	98.97
Solyc11g018690.1.1	Tomato	cytosol	43.12	76.02
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	76.12	69.13
KRH34992	Soybean	cytosol, plasma membrane, plastid	72.8	65.62
KRG91794	Soybean	cytosol, peroxisome, plasma membrane, plastid	72.64	65.37
Bra003903.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.34	60.62
CDX68292	Canola	cytosol, peroxisome, plasma membrane	65.34	60.62
Os11t0177400-01	Rice	plasma membrane	46.93	59.83
Bra007999.1-P	Field mustard	plasma membrane	65.17	59.64
Bra016095.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.34	59.61
CDY36671	Canola	plasma membrane	34.16	59.54
AT1G71960.1	Thale cress	cytosol, peroxisome, plasma membrane	65.17	59.37
GSMUA_Achr6P25480_001	Banana	cytosol, peroxisome, plastid	63.02	58.91
GSMUA_Achr11P...	Banana	plasma membrane	58.37	58.09
CDX72849	Canola	cytosol, peroxisome, plasma membrane	65.34	57.77
CDX82199	Canola	cytosol, peroxisome, plasma membrane, plastid	65.34	57.6
CDY03668	Canola	plasma membrane	65.17	57.29
CDX96365	Canola	plasma membrane	36.15	56.48
CDY36670	Canola	cytosol	33.33	55.37
Zm00001d004762_P001	Maize	plasma membrane	56.55	53.96
Zm00001d053049_P001	Maize	plasma membrane	56.88	53.93
CDX96366	Canola	cytosol	33.0	53.93
KXG27901	Sorghum	plasma membrane, plastid	57.05	53.0
TraesCS4D01G092000.1	Wheat	plasma membrane	56.88	52.93
TraesCS4A01G216900.1	Wheat	plasma membrane, plastid	56.55	52.7
HORVU4Hr1G018800.7	Barley	plastid	56.05	52.65
TraesCS4B01G095200.1	Wheat	plastid	56.05	52.48
GSMUA_Achr9P08630_001	Banana	cytosol, peroxisome, plasma membrane	57.71	51.33
PGSC0003DMT400039671	Potato	plasma membrane	46.77	50.72
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	49.25	48.45
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	48.92	45.67
PGSC0003DMT400039676	Potato	plasma membrane	47.1	45.15
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	48.26	43.96
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	49.09	43.85
PGSC0003DMT400054994	Potato	plastid	44.11	36.64
PGSC0003DMT400002062	Potato	cytosol	44.28	35.13
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	28.69	26.99
PGSC0003DMT400032370	Potato	plasma membrane	26.87	26.13
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	25.21	25.0
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	29.52	24.59
PGSC0003DMT400029838	Potato	extracellular	27.86	24.17
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	28.69	23.93
PGSC0003DMT400062852	Potato	plastid	26.04	23.75
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	23.22	23.49
PGSC0003DMT400061466	Potato	plasma membrane	28.86	23.48
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	27.86	23.2
PGSC0003DMT400084876	Potato	cytosol	26.87	22.22
PGSC0003DMT400050007	Potato	cytosol	28.03	20.31

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0080168
InterPro:IPR003439	UniProt:M0ZJW3	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400000879
PGSC:PGSC0003DMG400000879	EnsemblPlants:PGSC0003DMT400002293	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF225	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295304F	SEG:seg	:	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400000879]

Coordinates

chr11:-:11326917..11336464

Molecular Weight (calculated)

66695.7 Da

IEP (calculated)

9.122

GRAVY (calculated)

0.246

Length

603 amino acids

Sequence
(BLAST)

001: MFSTSAGPTS SDIENQTAVI HQERTILNGI TGMVSPGEIL AVLGPSGSGK STLLNALAGR LQGHNYTGTI LANNRKLTKQ VLKRTGFVTQ DDVLYPHLTV
101: RETLIFCALL RLPNSLNRNE KITVTDSVIT ELGLNKCEDT IIGNSFIRGV SGGERKRVSI AHEMLINPSL LILDEPTSGL DATAAYRLVS TLGSLAKKGK
201: TIITSVHQPS SRVFQMFNSV LVLSEGRCLY FGKGNEAMSY FESVGFSPSF PMNPADFLLD LANGVCQFDG VSEKDKPNVK QTLISTYNNV LALKVKAACL
301: EATNIVPKEI MNKGTYTCSS SKRSCTSCIS NWFNQFSILL QRGLKERRHE TFNYLRVFQV IAASLLAGSM WWHSDYRDIQ DRLGLLFFIS IFWGVFPSFN
401: AVFAFPQERA IFMKERASGM YTLSSYFMAR IVGDLPMDLI LPTLFLTITY WMAGLKPQLL AFLLTLLVLL SYVIVSQGLG LALGAIIMDA KQASTVITVT
501: MLAFVLTGGF YVHKVPACLA WIKYISTTFY SYRLLIDVQF GEGKEISDLL GCSHIQGSDR ANCKFIEQDI MGQIHPSMSL GILLIMFVGY RLIAYLALRR
601: IRA

Best Arabidopsis Sequence Match ( AT1G71960.1 )
(BLAST)

001: MSAFDGVENQ MNGPDSSPRL SQDPREPRSL LSSSCFPITL KFVDVCYRVK IHGMSNDSCN IKKLLGLKQK PSDETRSTEE RTILSGVTGM ISPGEFMAVL
101: GPSGSGKSTL LNAVAGRLHG SNLTGKILIN DGKITKQTLK RTGFVAQDDL LYPHLTVRET LVFVALLRLP RSLTRDVKLR AAESVISELG LTKCENTVVG
201: NTFIRGISGG ERKRVSIAHE LLINPSLLVL DEPTSGLDAT AALRLVQTLA GLAHGKGKTV VTSIHQPSSR VFQMFDTVLL LSEGKCLFVG KGRDAMAYFE
301: SVGFSPAFPM NPADFLLDLA NGVCQTDGVT EREKPNVRQT LVTAYDTLLA PQVKTCIEVS HFPQDNARFV KTRVNGGGIT TCIATWFSQL CILLHRLLKE
401: RRHESFDLLR IFQVVAASIL CGLMWWHSDY RDVHDRLGLL FFISIFWGVL PSFNAVFTFP QERAIFTRER ASGMYTLSSY FMAHVLGSLS MELVLPASFL
501: TFTYWMVYLR PGIVPFLLTL SVLLLYVLAS QGLGLALGAA IMDAKKASTI VTVTMLAFVL TGGYYVNKVP SGMVWMKYVS TTFYCYRLLV AIQYGSGEEI
601: LRMLGCDSKG KQGASAATSA GCRFVEEEVI GDVGMWTSVG VLFLMFFGYR VLAYLALRRI KH

Arabidopsis Description

ABCG25ABC transporter G family member 25 [Source:UniProtKB/Swiss-Prot;Acc:Q84TH5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.