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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96366 Canola cytosol 49.12 90.79
CDX96365 Canola plasma membrane 51.17 90.41
CDX68292 Canola cytosol, peroxisome, plasma membrane 85.04 89.23
CDY36671 Canola plasma membrane 44.87 88.44
AT1G71960.1 Thale cress cytosol, peroxisome, plasma membrane 84.46 87.01
CDX82199 Canola cytosol, peroxisome, plasma membrane, plastid 85.48 85.23
CDY03668 Canola plasma membrane 85.34 84.84
CDY36670 Canola cytosol 43.11 80.99
PGSC0003DMT400002293 Potato cytosol, peroxisome, plasma membrane 57.77 65.34
Solyc11g018680.1.1 Tomato golgi, mitochondrion, plasma membrane, plastid 27.42 64.48
KRG91794 Soybean cytosol, peroxisome, plasma membrane, plastid 61.44 62.54
VIT_18s0072g01220.t01 Wine grape cytosol, peroxisome, plasma membrane 60.7 62.35
KRH34992 Soybean cytosol, plasma membrane, plastid 61.0 62.18
Solyc11g018690.1.1 Tomato cytosol 30.94 61.7
GSMUA_Achr6P25480_001 Banana cytosol, peroxisome, plastid 54.55 57.67
GSMUA_Achr11P... Banana plasma membrane 51.17 57.59
Os11t0177400-01 Rice plasma membrane 39.74 57.29
Zm00001d053049_P001 Maize plasma membrane 50.59 54.25
Zm00001d004762_P001 Maize plasma membrane 50.15 54.11
TraesCS4D01G092000.1 Wheat plasma membrane 50.15 52.78
KXG27901 Sorghum plasma membrane, plastid 50.0 52.54
TraesCS4B01G095200.1 Wheat plastid 49.56 52.48
TraesCS4A01G216900.1 Wheat plasma membrane, plastid 49.71 52.4
HORVU4Hr1G018800.7 Barley plastid 49.12 52.18
GSMUA_Achr9P08630_001 Banana cytosol, peroxisome, plasma membrane 50.73 51.03
CDY50951 Canola cytosol, peroxisome, plastid 45.31 48.21
CDY47690 Canola cytosol, peroxisome, plastid 45.16 48.05
CDX92829 Canola plasma membrane 45.31 47.98
CDX89252 Canola cytosol, peroxisome, plasma membrane 44.72 47.81
CDY29837 Canola plasma membrane 45.01 47.67
CDY29304 Canola cytosol, peroxisome, plasma membrane 44.57 47.65
CDY49155 Canola cytosol, peroxisome, plasma membrane 44.72 47.0
CDY46506 Canola cytosol, peroxisome, plasma membrane 45.6 46.56
CDY48079 Canola plastid 44.57 45.71
CDY51602 Canola plastid 44.28 45.35
CDX99764 Canola cytosol, peroxisome, plasma membrane 45.16 44.96
CDY12299 Canola cytosol, peroxisome, plasma membrane 44.57 42.7
CDY12359 Canola cytosol, nucleus, plasma membrane 17.89 40.53
CDY04991 Canola plastid 41.35 39.28
CDX70095 Canola plastid 41.5 39.25
CDY23205 Canola plastid 41.94 38.91
CDX95330 Canola plastid 41.06 37.94
CDY14079 Canola plasma membrane 41.5 37.63
CDX98933 Canola plasma membrane 41.64 37.62
CDY24203 Canola peroxisome 36.36 36.42
CDY43362 Canola cytosol, peroxisome, plasma membrane 36.36 36.42
CDX76121 Canola cytosol 22.29 32.27
CDY02907 Canola cytosol, peroxisome, plasma membrane 27.13 29.13
CDX74853 Canola plastid 26.1 28.85
CDX89610 Canola cytosol, peroxisome, plasma membrane 24.93 28.1
CDX93119 Canola cytosol, peroxisome, plasma membrane 24.78 27.93
CDX92533 Canola plastid 25.37 27.5
CDY13996 Canola plasma membrane 19.21 27.35
CDX69629 Canola plastid 29.03 27.2
CDY27043 Canola plastid 23.31 26.99
CDX96159 Canola plastid 23.17 26.83
CDY02516 Canola cytosol, peroxisome, plasma membrane 23.02 26.7
CDX67624 Canola cytosol, peroxisome, plasma membrane 27.57 26.59
CDY59400 Canola cytosol, plasma membrane, plastid 22.87 26.53
CDX89396 Canola plasma membrane 22.29 26.53
CDX94418 Canola plastid 22.29 26.53
CDY09810 Canola plastid 29.03 26.33
CDY40201 Canola cytosol 26.69 25.71
CDY37656 Canola cytosol, peroxisome, plasma membrane 26.83 25.67
CDX76119 Canola cytosol, peroxisome, plasma membrane 25.07 25.64
CDY65003 Canola cytosol, peroxisome, plasma membrane 26.69 25.49
CDX93388 Canola plasma membrane 27.57 25.37
CDY50899 Canola cytosol 12.32 25.23
CDY18451 Canola cytosol, peroxisome, plasma membrane 27.42 25.2
CDX73549 Canola cytosol, peroxisome, plasma membrane 27.42 24.74
CDY37372 Canola cytosol, peroxisome, plasma membrane 26.1 24.28
CDY40385 Canola cytosol, peroxisome, plasma membrane 26.1 24.15
CDX73404 Canola plasma membrane 27.13 23.45
CDY44641 Canola plasma membrane 9.97 22.9
CDX76122 Canola plasma membrane 29.03 15.44
CDY02906 Canola plasma membrane 29.03 15.41
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300GO:A0A078C9I1InterPro:AAA+_ATPaseInterPro:ABC_2_transInterPro:ABC_transporter-like
EnsemblPlants:CDX72849ProteinID:CDX72849ProteinID:CDX72849.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0016020GO:GO:0016787GO:GO:0016887
EnsemblPlantsGene:GSBRNA2T00103247001InterPro:IPR003439InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF01061PFscan:PS50893
PANTHER:PTHR19241PANTHER:PTHR19241:SF225SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0004EE5623
SEG:seg:::::
Description
BnaC06g32970D
Coordinates
chrLK031797:-:652797..658664
Molecular Weight (calculated)
74804.7 Da
IEP (calculated)
8.759
GRAVY (calculated)
0.227
Length
682 amino acids
Sequence
(BLAST)
001: MSGFDGVENQ MNGPDSSPRL PQDTCDQPSL LFSSSPCFPI TLKFVDVCYR VKIHGKSSDS VKLKRLLGLE HKPSDEIPST ERTILSGVTG MVTPGEFMAV
101: LGPSGSGKST LLNAVAGRLH GTGLTGKILA NDVKLTKQTL KRTGFVAQDD LLYPHLTVRE TLVFVALLRL PRSLTRDVKI KAAESVISEL GLEKCENTVV
201: GNTFIRGISG GERKRVSIAH ELLINPSLLV LDEPTSGLDA TAALRLVQTL AGLAHEKGKT VVTSIHQPSS RVFQMFDTVL LLSEGKCLFV GKGRDAMAYF
301: DSVGFSPAFP MNPADFLLDL ANGGKDICIE KYFENNSSTP IKESVCQIDG TTEREKPDVR QTLAIAYDTL LAPNVKACID ASPSPAENAR FVKTRKNARG
401: IMSGLATWFS QLCILLHRLI KERRHESFDA LRVFQVLAAS LLCSLMWWHS DYRDVHDRLG LLFFISIFWG VLPSFNAVFT FPQERAIFTR ERASGMYTLS
501: SYFMAHVIGS LSMELVLPAA FLTLTYWMVG LRPGLIPFLL TLSVLLLYVL ASQGLGLALG AAIMDAKKAS TIVTVTMLAF VLTGGYYVNK VPSGMVWMKY
601: VSTTFYCYRL LIAVQYGNGD AILAMVGCEP KGTHGAAKTA GCRFMEEEVI GDIGLWTSVS VLFFMFVGYR ILAYLALRRI KL
Best Arabidopsis Sequence Match ( AT1G71960.1 )
(BLAST)
001: MSAFDGVENQ MNGPDSSPRL SQDPREPRSL LSSSCFPITL KFVDVCYRVK IHGMSNDSCN IKKLLGLKQK PSDETRSTEE RTILSGVTGM ISPGEFMAVL
101: GPSGSGKSTL LNAVAGRLHG SNLTGKILIN DGKITKQTLK RTGFVAQDDL LYPHLTVRET LVFVALLRLP RSLTRDVKLR AAESVISELG LTKCENTVVG
201: NTFIRGISGG ERKRVSIAHE LLINPSLLVL DEPTSGLDAT AALRLVQTLA GLAHGKGKTV VTSIHQPSSR VFQMFDTVLL LSEGKCLFVG KGRDAMAYFE
301: SVGFSPAFPM NPADFLLDLA NGVCQTDGVT EREKPNVRQT LVTAYDTLLA PQVKTCIEVS HFPQDNARFV KTRVNGGGIT TCIATWFSQL CILLHRLLKE
401: RRHESFDLLR IFQVVAASIL CGLMWWHSDY RDVHDRLGLL FFISIFWGVL PSFNAVFTFP QERAIFTRER ASGMYTLSSY FMAHVLGSLS MELVLPASFL
501: TFTYWMVYLR PGIVPFLLTL SVLLLYVLAS QGLGLALGAA IMDAKKASTI VTVTMLAFVL TGGYYVNKVP SGMVWMKYVS TTFYCYRLLV AIQYGSGEEI
601: LRMLGCDSKG KQGASAATSA GCRFVEEEVI GDVGMWTSVG VLFLMFFGYR VLAYLALRRI KH
Arabidopsis Description
ABCG25ABC transporter G family member 25 [Source:UniProtKB/Swiss-Prot;Acc:Q84TH5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.