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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04991 Canola plastid 92.42 96.8
CDX70095 Canola plastid 90.03 93.9
CDX98933 Canola plasma membrane 94.15 93.77
AT5G06530.1 Thale cress plasma membrane 92.55 92.68
VIT_08s0032g00790.t01 Wine grape plastid 76.6 77.01
Solyc01g006720.2.1 Tomato plastid 73.4 76.24
PGSC0003DMT400054994 Potato plastid 73.4 76.03
GSMUA_Achr8P04700_001 Banana cytosol, peroxisome, plasma membrane, plastid 69.55 70.3
CDY23205 Canola plastid 67.55 69.12
CDX95330 Canola plastid 66.76 68.02
TraesCS4D01G271500.1 Wheat plastid 67.55 67.55
TraesCS4A01G032900.1 Wheat plastid 67.95 67.06
HORVU4Hr1G072620.1 Barley plastid 67.42 66.97
TraesCS4B01G272400.1 Wheat cytosol, peroxisome, plasma membrane, plastid 67.69 66.97
GSMUA_Achr6P23160_001 Banana plastid 65.43 66.94
EER92832 Sorghum plasma membrane 67.69 66.71
Zm00001d027723_P002 Maize cytosol, nucleus, plasma membrane 66.49 66.4
Os03t0157400-01 Rice cytosol, peroxisome, plasma membrane 67.82 66.15
GSMUA_Achr1P04620_001 Banana cytosol, peroxisome, plasma membrane, plastid 62.23 65.45
CDY47690 Canola cytosol, peroxisome, plastid 40.29 47.27
CDY50951 Canola cytosol, peroxisome, plastid 40.29 47.27
CDX92829 Canola plasma membrane 40.43 47.2
CDY49155 Canola cytosol, peroxisome, plasma membrane 40.69 47.15
CDY29837 Canola plasma membrane 40.29 47.05
CDX89252 Canola cytosol, peroxisome, plasma membrane 39.63 46.71
CDY29304 Canola cytosol, peroxisome, plasma membrane 39.36 46.4
CDY51602 Canola plastid 38.7 43.69
CDY36670 Canola cytosol 21.01 43.53
CDY46506 Canola cytosol, peroxisome, plasma membrane 38.43 43.26
CDY43362 Canola cytosol, peroxisome, plasma membrane 39.1 43.17
CDY24203 Canola peroxisome 39.1 43.17
CDY48079 Canola plastid 38.16 43.16
CDX96366 Canola cytosol 21.01 42.82
CDX68292 Canola cytosol, peroxisome, plasma membrane 36.97 42.77
CDY12299 Canola cytosol, peroxisome, plasma membrane 40.29 42.56
CDX99764 Canola cytosol, peroxisome, plasma membrane 38.3 42.04
CDX72849 Canola cytosol, peroxisome, plasma membrane 37.63 41.5
CDY12359 Canola cytosol, nucleus, plasma membrane 16.36 40.86
CDY03668 Canola plasma membrane 36.7 40.23
CDX82199 Canola cytosol, peroxisome, plasma membrane, plastid 36.44 40.06
CDY36671 Canola plasma membrane 17.29 37.57
CDX96365 Canola plasma membrane 18.75 36.53
CDX76121 Canola cytosol 20.74 33.12
CDX89610 Canola cytosol, peroxisome, plasma membrane 23.94 29.75
CDX93119 Canola cytosol, peroxisome, plasma membrane 23.8 29.59
CDY02907 Canola cytosol, peroxisome, plasma membrane 24.87 29.45
CDY50899 Canola cytosol 12.77 28.83
CDY59400 Canola cytosol, plasma membrane, plastid 21.81 27.89
CDY02516 Canola cytosol, peroxisome, plasma membrane 21.68 27.72
CDX94418 Canola plastid 20.88 27.4
CDX74853 Canola plastid 22.47 27.39
CDX92533 Canola plastid 22.61 27.03
CDX89396 Canola plasma membrane 20.48 26.88
CDY13996 Canola plasma membrane 17.02 26.72
CDY27043 Canola plastid 20.74 26.49
CDX93388 Canola plasma membrane 26.06 26.45
CDX67624 Canola cytosol, peroxisome, plasma membrane 24.87 26.45
CDX69629 Canola plastid 25.4 26.24
CDX96159 Canola plastid 20.48 26.15
CDY40201 Canola cytosol 24.47 25.99
CDX76119 Canola cytosol, peroxisome, plasma membrane 23.01 25.94
CDX73549 Canola cytosol, peroxisome, plasma membrane 26.06 25.93
CDY18451 Canola cytosol, peroxisome, plasma membrane 25.53 25.88
CDY09810 Canola plastid 25.53 25.53
CDY37656 Canola cytosol, peroxisome, plasma membrane 24.2 25.53
CDY65003 Canola cytosol, peroxisome, plasma membrane 24.07 25.35
CDY40385 Canola cytosol, peroxisome, plasma membrane 23.14 23.61
CDY37372 Canola cytosol, peroxisome, plasma membrane 23.01 23.6
CDX73404 Canola plasma membrane 24.34 23.19
CDY44641 Canola plasma membrane 7.71 19.53
CDY02906 Canola plasma membrane 26.06 15.25
CDX76122 Canola plasma membrane 25.93 15.21
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300GO:A0A078FMJ1UniProt:A0A078FMJ1InterPro:AAA+_ATPaseInterPro:ABC_2_trans
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlants:CDY14079ProteinID:CDY14079ProteinID:CDY14079.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0016887EnsemblPlantsGene:GSBRNA2T00078617001InterPro:IPR003439InterPro:P-loop_NTPase
PFAM:PF00005PFAM:PF01061ScanProsite:PS00211PFscan:PS50893PANTHER:PTHR19241PANTHER:PTHR19241:SF286
SMART:SM00382SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0004EEF005SEG:seg:
Description
BnaC02g01960DBnaC02g01960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMJ1]
Coordinates
chrLK032040:+:329910..337197
Molecular Weight (calculated)
83002.9 Da
IEP (calculated)
9.571
GRAVY (calculated)
0.014
Length
752 amino acids
Sequence
(BLAST)
001: MSTEKPPLAS GLARTRSEQL YETVAAAIKS PHGSMDANGV PATTPTITGS GGGTLSRKSS RRLVMGASPG RSGGAGTHIR KSRSAQLKLE LDEVSSGAAL
101: SRASSASLGL SFSFTGFAMP PDEISDSNPF SDDEMIPEDN ENKKPKFQAE PTLPIFLKFK EVTYKVVIKK LTSSAEKEIL SGINGSVSPG EVLALMGPSG
201: SGKTTLLSLL GGRISQSAIG GSITYNDKPY SKYLKSKIGF VTQDDVLFPH LTVKETLTYA ARLRLPKTLT REQKEQRAIG VIQELGLERC QDTMIGGAFV
301: RGVSGGERKR VSIGNEIIIN PSLLLLDEPT SGLDSTTALR IIQMLHDIAE AGKTVITTIH QPSSRLFHRF DKLILLGRGN LLYFGKSSEA LDYFSSIGCS
401: PLIAMNPAEF LLDLANGNIN DISVPSELED RVQVGNSDRE PRTGKPSPAV VHEYLVEAYE TRVTEQEKKK LTDPVPLGEE EAKAKVLRLK RQWGASWWEQ
501: YCILFARGLK ERRHEYFSWL RVTQVLSTAV ILGLLWWRSD IRTPRGLQDQ AGLLFFIAVF WGFFPVFTAI FAFPQERAML NKERAADMYR LSAYFLARTT
601: SDLPLDFILP SLFLLVVYFM TGLRLSPYPF FLSMLTVFLC IIAAQGLGLA IGAILMDLKK ATTLASVTVM TFMLAGGFFV KEVPVFISWI RYLSFNYHTY
701: KLLLKVQYQD FAQSINGTKI DDGLTEVVAL VVMIFGYRLL AYLSLRQMKI TT
Best Arabidopsis Sequence Match ( AT5G06530.2 )
(BLAST)
001: MSMEKPPLAS GLARTRSEQL YETVAADIRS PHGSMDANGV PATAPAAVGG GGTLSRKSSR RLMGMSPGRS SGAGTHIRKS RSAQLKLELE EVSSGAALSR
101: ASSASLGLSF SFTGFAMPPE EISDSKPFSD DEMIPEDIEA GKKKPKFQAE PTLPIFLKFR DVTYKVVIKK LTSSVEKEIL TGISGSVNPG EVLALMGPSG
201: SGKTTLLSLL AGRISQSSTG GSVTYNDKPY SKYLKSKIGF VTQDDVLFPH LTVKETLTYA ARLRLPKTLT REQKKQRALD VIQELGLERC QDTMIGGAFV
301: RGVSGGERKR VSIGNEIIIN PSLLLLDEPT SGLDSTTALR TILMLHDIAE AGKTVITTIH QPSSRLFHRF DKLILLGRGS LLYFGKSSEA LDYFSSIGCS
401: PLIAMNPAEF LLDLANGNIN DISVPSELDD RVQVGNSGRE TQTGKPSPAA VHEYLVEAYE TRVAEQEKKK LLDPVPLDEE AKAKSTRLKR QWGTCWWEQY
501: CILFCRGLKE RRHEYFSWLR VTQVLSTAVI LGLLWWQSDI RTPMGLQDQA GLLFFIAVFW GFFPVFTAIF AFPQERAMLN KERAADMYRL SAYFLARTTS
601: DLPLDFILPS LFLLVVYFMT GLRISPYPFF LSMLTVFLCI IAAQGLGLAI GAILMDLKKA TTLASVTVMT FMLAGGFFVK KVPVFISWIR YLSFNYHTYK
701: LLLKVQYQDF AVSINGMRID NGLTEVAALV VMIFGYRLLA YLSLRQMKIV T
Arabidopsis Description
ABCG22ABC transporter G family member 22 [Source:UniProtKB/Swiss-Prot;Acc:Q93YS4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.