CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G53510.1	Thale cress	plasma membrane	85.05	87.01
CDX93388	Canola	plasma membrane	76.19	77.73
CDY18451	Canola	cytosol, peroxisome, plasma membrane	75.93	77.36
Bra007006.1-P	Field mustard	cytosol, peroxisome, plasma membrane	95.24	76.11
CDY44641	Canola	plasma membrane	28.84	73.4
CDX74853	Canola	plastid	57.67	70.66
KRH67592	Soybean	plastid	68.52	70.57
KRG95875	Soybean	cytosol, peroxisome, plasma membrane	67.59	69.43
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.67	68.48
CDX69629	Canola	plastid	65.34	67.86
Solyc09g005970.1.1	Tomato	plasma membrane	64.55	66.12
PGSC0003DMT400061466	Potato	plasma membrane	64.68	65.99
CDY09810	Canola	plastid	65.21	65.56
GSMUA_Achr8P02140_001	Banana	cytosol, peroxisome, plasma membrane	58.6	62.75
GSMUA_Achr5P28450_001	Banana	plasma membrane	57.54	62.32
CDY50899	Canola	cytosol	26.72	60.66
CDY02907	Canola	cytosol, peroxisome, plasma membrane	50.66	60.31
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	58.86	59.73
CDX76121	Canola	cytosol	37.17	59.66
Os05t0120200-01	Rice	plasma membrane	55.16	59.66
Zm00001d012438_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	58.6	59.62
HORVU5Hr1G021120.1	Barley	cytosol, peroxisome, plasma membrane	53.7	59.62
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	53.57	59.47
TraesCS5A01G078500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	53.44	59.32
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	53.44	59.32
HORVU0Hr1G007130.1	Barley	plasma membrane, plastid	59.39	59.31
HORVU3Hr1G087130.1	Barley	plasma membrane, plastid	59.39	59.31
TraesCS3B01G387500.1	Wheat	plastid	59.39	59.31
TraesCS3A01G354500.1	Wheat	plasma membrane, plastid	59.26	59.26
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	59.26	59.26
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	55.56	58.82
Os05t0120000-00	Rice	plasma membrane	52.91	58.82
HORVU3Hr1G007180.1	Barley	cytosol, peroxisome, plasma membrane	51.85	58.68
Zm00001d028689_P001	Maize	cytosol, peroxisome, plasma membrane	61.11	58.48
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	61.51	58.42
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	61.11	58.33
TraesCS4A01G103400.1	Wheat	cytosol, peroxisome, plasma membrane	61.38	58.29
Os01t0836600-01	Rice	plasma membrane	57.67	58.21
CDX76119	Canola	cytosol, peroxisome, plasma membrane	51.32	58.17
Zm00001d042953_P001	Maize	plasma membrane	58.47	58.08
Os03t0281900-01	Rice	cytosol, plasma membrane	60.45	58.07
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	51.72	57.93
EES17614	Sorghum	cytosol, peroxisome, vacuole	54.23	57.75
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	52.78	57.66
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	52.91	57.64
CDX67624	Canola	cytosol, peroxisome, plasma membrane	53.84	57.57
Zm00001d035553_P001	Maize	plasma membrane	54.23	57.42
CDY40201	Canola	cytosol	53.7	57.34
TraesCS3A01G036400.1	Wheat	cytosol, peroxisome, vacuole	51.19	57.33
Zm00001d011006_P001	Maize	cytosol, peroxisome, vacuole	53.84	57.16
TraesCS1A01G049600.2	Wheat	cytosol, peroxisome, plasma membrane	52.78	57.0
CDY65003	Canola	cytosol, peroxisome, plasma membrane	53.57	56.72
CDY37656	Canola	cytosol, peroxisome, plasma membrane	53.04	56.24
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	61.24	55.05
CDX73404	Canola	plasma membrane	54.37	52.09
HORVU1Hr1G009920.2	Barley	plasma membrane, plastid	52.78	50.57
GSMUA_Achr6P33280_001	Banana	cytosol, peroxisome, plasma membrane	58.86	49.5
HORVU4Hr1G058160.2	Barley	cytosol, peroxisome	37.7	43.45
HORVU4Hr1G058070.2	Barley	cytosol	46.69	43.31
HORVU5Hr1G021110.1	Barley	cytosol	23.41	41.26
CDY13996	Canola	plasma membrane	23.28	36.74
CDX76122	Canola	plasma membrane	62.04	36.58
CDY02906	Canola	plasma membrane	61.77	36.34
Os03t0282100-00	Rice	cytosol, nucleus, plastid	35.58	35.12
CDY02516	Canola	cytosol, peroxisome, plasma membrane	27.25	35.03
CDY59400	Canola	cytosol, plasma membrane, plastid	27.12	34.86
CDX89610	Canola	cytosol, peroxisome, plasma membrane	27.78	34.71
CDX93119	Canola	cytosol, peroxisome, plasma membrane	27.78	34.71
CDX94418	Canola	plastid	25.53	33.68
CDY27043	Canola	plastid	26.19	33.62
CDX96366	Canola	cytosol	16.4	33.6
CDX89396	Canola	plasma membrane	25.4	33.51
CDX92533	Canola	plastid	27.65	33.23
CDY36670	Canola	cytosol	15.87	33.06
CDX96159	Canola	plastid	25.66	32.94
GSMUA_Achr6P08820_001	Banana	plasma membrane	53.44	32.69
CDY51602	Canola	plastid	24.87	28.23
CDX68292	Canola	cytosol, peroxisome, plasma membrane	24.21	28.15
CDY46506	Canola	cytosol, peroxisome, plasma membrane	24.87	28.14
CDY48079	Canola	plastid	24.74	28.12
CDX92829	Canola	plasma membrane	23.55	27.64
CDY29837	Canola	plasma membrane	23.55	27.64
CDY47690	Canola	cytosol, peroxisome, plastid	23.28	27.46
CDY50951	Canola	cytosol, peroxisome, plastid	23.28	27.46
CDX72849	Canola	cytosol, peroxisome, plasma membrane	24.74	27.42
CDX99764	Canola	cytosol, peroxisome, plasma membrane	24.74	27.3
CDY03668	Canola	plasma membrane	24.74	27.26
CDX89252	Canola	cytosol, peroxisome, plasma membrane	22.88	27.12
CDY29304	Canola	cytosol, peroxisome, plasma membrane	22.88	27.12
CDY04991	Canola	plastid	25.66	27.02
CDY49155	Canola	cytosol, peroxisome, plasma membrane	23.15	26.96
CDX82199	Canola	cytosol, peroxisome, plasma membrane, plastid	24.34	26.9
CDX70095	Canola	plastid	25.26	26.49
CDY24203	Canola	peroxisome	23.55	26.14
CDY14079	Canola	plasma membrane	25.93	26.06
CDX95330	Canola	plastid	25.4	26.02
CDY43362	Canola	cytosol, peroxisome, plasma membrane	23.41	25.99
CDY23205	Canola	plastid	25.26	25.99
CDX98933	Canola	plasma membrane	25.53	25.56
CDY12299	Canola	cytosol, peroxisome, plasma membrane	23.15	24.58
CDY37372	Canola	cytosol, peroxisome, plasma membrane	22.49	23.19
CDY40385	Canola	cytosol, peroxisome, plasma membrane	22.49	23.07
CDY12359	Canola	cytosol, nucleus, plasma membrane	8.73	21.93
CDY36671	Canola	plasma membrane	9.26	20.23
CDX96365	Canola	plasma membrane	10.32	20.21

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	GO:A0A078CBJ5	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlants:CDX73549	ProteinID:CDX73549	ProteinID:CDX73549.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010345	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887
GO:GO:0019748	EnsemblPlantsGene:GSBRNA2T00109080001	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF428	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0004EDF2D7	SEG:seg	:	:	:

Description

BnaC08g24540DABC transporter G family member 20 [Source:Projected from Arabidopsis thaliana (AT3G53510) UniProtKB/Swiss-Prot;Acc:Q9LFG8]

Coordinates

chrLK031799:+:1109545..1111903

Molecular Weight (calculated)

83825.4 Da

IEP (calculated)

8.422

GRAVY (calculated)

0.098

Length

756 amino acids

Sequence
(BLAST)

001: MSGLLDKLSP ARRANKSDDL PLFYTDQSVG FHRGHRNTPK VSVTLAELLM SMEDDQNGQS QAWDIALASN FFSSVSSYPL PSPSPSPSPF VLSFKDLTYS
101: VKITKKFNPL PCCGSSDGDG MEMNTKMLLN GISGEAKEGE MMAVLGASGS GKSTLIDALA NRIAKESLHG AITLNGEVLE SGLHKVISAY VMQDDLLFPM
201: LTVEETLMFS AEFRLPSSLP KKKKQARVQA LIDQLGLRNA ATTVIGDEGH RGVSGGERRR VSIGIDIIHD PIILFLDEPT SGLDSTSAYI VVKVLQRVAQ
301: SGSIVIMSIH QPSYRILGLL DKLLFLSRGN TVYSGSPTDL PRFFSEYGHI IPENENKTEF ALDLIRELED SPEGTKTLVD FHKQWRAKQT LNETTRNTNV
401: SLKDAIDASI SREKLVSACR AGPEILRDRS SGGETNLKST FQTFANPFWT EILVIAKRSM LNSRRQPELF GIRLGAVLVT GTILATMFYK LDNSPRGIQE
501: RLGFFAFAMS TTFYTCAEAI PVFLQERYIF MRETAYNAYR RSSYVLAHTI ISLPALVILS ATFAATTFFS VGLAGGSEGF FFFFLTILAA FWAGSSFVTF
601: LSGVVSHVMI GFTVVVAILA YFLLFSGFFI ARDRIPLYWL WFHYLSLVKY PYEGVLQNEF EDSTKCFVRG IQMFDSSPLG QVPDAVKISL LKSMSGVLGF
701: NVTAETCVTT GVDILRKQGI TEMSKWNCLW ITVAWGFLFR VLFYFTLLIG SKNKRR

Best Arabidopsis Sequence Match ( AT3G53510.1 )
(BLAST)

001: MSGLFGILSP AKRVNGDGLP LFYNIHKSVE LQRCHRDTAR VSVTLAELLM SVEDEGDDQS RAMDIAVASN FWSSVPSSRV PSSSPFVLSF KDLTYSVKIK
101: KKFKPFPCCG NSPFDGNDME MNTKVLLNGI SGEAREGEMM AVLGASGSGK STLIDALANR ISKESLRGDI TLNGEVLESS LHKVISAYVM QDDLLFPMLT
201: VEETLMFSAE FRLPSSLSKK KKKARVQALI DQLGLRNAAK TVIGDEGHRG VSGGERRRVS IGTDIIHDPI ILFLDEPTSG LDSTSAYMVV KVLQRIAQSG
301: SIVIMSIHQP SYRILGLLDK LIFLSRGNTV YSGSPTHLPQ FFSEFGHPIP ENENKPEFAL DLIRELEDSP EGTKSLVEFH KQWRAKQTSS QSRRNTNVSL
401: KDAISASISR GKLVSGATNL RSSFQTFANP FWTEMLVIGK RSILNSRRQP ELFGIRLGAV LVTGMILATI FWKLDNSPRG IQERLGFFAF AMSTTFYTCA
501: EAIPVFLQER YIFMRETAYN AYRRSSYVLA HTIISIPALI ILSAAFAAST FSAVGLAGGS EGFLFFFFTI LTAFWAGSSF VTFLSGVVSH VMIGFTVVVA
601: ILAYFLLFSG FFISRDRIPL YWIWFHYLSL VKYPYEGVLQ NEFEDPTKCF VRGIQMFDNS PLGQVPTAVK ISLLKSMSGV LGINVTAETC VTTGIDILKQ
701: QGITEISKWN CLWITVAWGF FFRVLFYFTL LIGSKNKRR

Arabidopsis Description

ABCG20ABC transporter G family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFG8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.