Factsheet for PGSC0003DMT400061466

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005970.1.1	Tomato	plasma membrane	97.17	97.56
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	72.47	72.96
KRH67592	Soybean	plastid	69.77	70.44
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	68.15	69.75
AT3G53510.1	Thale cress	plasma membrane	68.96	69.15
KRG95875	Soybean	cytosol, peroxisome, plasma membrane	68.56	69.02
PGSC0003DMT400029838	Potato	extracellular	63.83	68.06
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	65.99	67.54
CDX93388	Canola	plasma membrane	67.07	67.07
Bra017193.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.94	66.85
CDY18451	Canola	cytosol, peroxisome, plasma membrane	66.94	66.85
AT2G37360.1	Thale cress	cytosol, peroxisome, plasma membrane	67.07	65.83
CDX73549	Canola	cytosol, peroxisome, plasma membrane	65.99	64.68
GSMUA_Achr5P28450_001	Banana	plasma membrane	59.65	63.32
GSMUA_Achr8P02140_001	Banana	cytosol, peroxisome, plasma membrane	60.32	63.31
Zm00001d012438_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	61.13	60.97
Os05t0120200-01	Rice	plasma membrane	56.55	59.94
HORVU5Hr1G021120.1	Barley	cytosol, peroxisome, plasma membrane	55.06	59.91
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	54.93	59.77
TraesCS5A01G078500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	54.79	59.62
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	59.92	59.6
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	54.66	59.47
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	55.6	59.37
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	63.43	59.34
Zm00001d028689_P001	Maize	cytosol, peroxisome, plasma membrane	63.16	59.24
TraesCS3B01G387500.1	Wheat	plastid	60.46	59.18
TraesCS4A01G103400.1	Wheat	cytosol, peroxisome, plasma membrane	63.56	59.17
HORVU3Hr1G007180.1	Barley	cytosol, peroxisome, plasma membrane	53.31	59.13
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	60.32	59.13
HORVU3Hr1G087130.1	Barley	plasma membrane, plastid	60.32	59.05
HORVU0Hr1G007130.1	Barley	plasma membrane, plastid	60.32	59.05
Zm00001d042953_P001	Maize	plasma membrane	60.59	59.0
TraesCS3A01G354500.1	Wheat	plasma membrane, plastid	60.19	58.99
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	55.06	58.96
Os05t0120000-00	Rice	plasma membrane	53.98	58.82
TraesCS1A01G049600.2	Wheat	cytosol, peroxisome, plasma membrane	55.47	58.71
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	63.02	58.67
Os01t0836600-01	Rice	plasma membrane	59.24	58.61
Zm00001d011006_P001	Maize	cytosol, peroxisome, vacuole	56.28	58.57
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	56.14	58.26
Zm00001d035553_P001	Maize	plasma membrane	55.74	57.84
Os03t0281900-01	Rice	cytosol, plasma membrane	61.27	57.69
EES17614	Sorghum	cytosol, peroxisome, vacuole	54.79	57.18
TraesCS3A01G036400.1	Wheat	cytosol, peroxisome, vacuole	51.82	56.89
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	51.69	56.74
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	63.29	55.77
Bra007006.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.8	52.33
HORVU1Hr1G009920.2	Barley	plasma membrane, plastid	55.47	52.09
GSMUA_Achr6P33280_001	Banana	cytosol, peroxisome, plasma membrane	61.0	50.28
HORVU4Hr1G058070.2	Barley	cytosol	49.93	45.4
HORVU4Hr1G058160.2	Barley	cytosol, peroxisome	37.79	42.68
HORVU5Hr1G021110.1	Barley	cytosol	24.43	42.19
PGSC0003DMT400032370	Potato	plasma membrane	30.36	36.29
PGSC0003DMT400084876	Potato	cytosol	35.49	36.08
Os03t0282100-00	Rice	cytosol, nucleus, plastid	35.36	34.2
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	27.53	33.55
PGSC0003DMT400050007	Potato	cytosol	37.52	33.41
PGSC0003DMT400062852	Potato	plastid	29.42	32.98
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	28.34	32.76
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	26.32	32.72
GSMUA_Achr6P08820_001	Banana	plasma membrane	53.04	31.8
PGSC0003DMT400039671	Potato	plasma membrane	22.54	30.04
PGSC0003DMT400039676	Potato	plasma membrane	24.7	29.09
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	23.89	28.87
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	23.48	28.86
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	24.29	26.67
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	23.21	26.63
PGSC0003DMT400054994	Potato	plastid	25.1	25.62
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	22.81	25.53
PGSC0003DMT400002062	Potato	cytosol	24.97	24.34
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	22.0	22.55

Protein Annotations

EntrezGene:102596308	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1C7I7	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400023918	PGSC:PGSC0003DMG400023918
EnsemblPlants:PGSC0003DMT400061466	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF428	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296ABD9	RefSeq:XP_006345684.1	SEG:seg	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400023918]

Coordinates

chr9:-:7152470..7155116

Molecular Weight (calculated)

82589.1 Da

IEP (calculated)

9.694

GRAVY (calculated)

0.055

Length

741 amino acids

Sequence
(BLAST)

001: MSNLGGGDDM SSASDLPFLG PRNNMELQEF GRKPRHNVSI TLGELLKRLG DSAEEKNQVL ELGNHSNYTT TTPSSFPFVL SFHNLTYSVK VKSKISLPRW
101: LRRGDKDDEL SSDNNMKVLL NDISGEAREG EIMAVLGASG SGKSTLIDAL ADRISRESLK GNVTLNGEVL ESKLLKVISA YVMQDDLLFP MLTVEETLMF
201: SAEFRLPRTL SKSKKNARVQ ALIDQLGLRN AAKTVIGDEG HRGVSGGERR RVSIGIDIIH DPIVLFLDEP TSGLDSTSAY MVVKVLQRIA QSGSIVIMSI
301: HQPSYRILSL LDRLIILSRG HTVLTSPPSS LQQFFADFGN PIPENENRIE FALDFIRELE GTPNGTKTLM EFNKTWQRER NSTTSTSSFY NGPKPSLKDA
401: ISASVSRGKL VSGATNIDPN VSSSNVPKFA NPFWVDMVVI AKRSMLNSMR MPELFGMRFG AVVVTGIILA TIFWKLDNSP KGVQERLGFF AFAMSTTFYT
501: CAEAIPVFLQ ERYIFMRETA HNAYRRSSYV VSHAIISLPS ILVLSIAFAV TTYWSVGLAG GVSGFLYFLL FLLASFWAGS SFVTFLSGVI YNIMMAYTVV
601: VAVLAYFFLF SGFFISRDRI PPYWIWFHYM SLVKYPYQGV LQNEFSDPNK CFVKGVQLFD TSPLRAVPEA LKIKLLQNMS KTLGMNITNT TCLTTGSDIL
701: KQSGGTDLNK WTCFWITIGL GFFFRILFYF ALLIGSKNKR R

Best Arabidopsis Sequence Match ( AT3G53510.1 )
(BLAST)

001: MSGLFGILSP AKRVNGDGLP LFYNIHKSVE LQRCHRDTAR VSVTLAELLM SVEDEGDDQS RAMDIAVASN FWSSVPSSRV PSSSPFVLSF KDLTYSVKIK
101: KKFKPFPCCG NSPFDGNDME MNTKVLLNGI SGEAREGEMM AVLGASGSGK STLIDALANR ISKESLRGDI TLNGEVLESS LHKVISAYVM QDDLLFPMLT
201: VEETLMFSAE FRLPSSLSKK KKKARVQALI DQLGLRNAAK TVIGDEGHRG VSGGERRRVS IGTDIIHDPI ILFLDEPTSG LDSTSAYMVV KVLQRIAQSG
301: SIVIMSIHQP SYRILGLLDK LIFLSRGNTV YSGSPTHLPQ FFSEFGHPIP ENENKPEFAL DLIRELEDSP EGTKSLVEFH KQWRAKQTSS QSRRNTNVSL
401: KDAISASISR GKLVSGATNL RSSFQTFANP FWTEMLVIGK RSILNSRRQP ELFGIRLGAV LVTGMILATI FWKLDNSPRG IQERLGFFAF AMSTTFYTCA
501: EAIPVFLQER YIFMRETAYN AYRRSSYVLA HTIISIPALI ILSAAFAAST FSAVGLAGGS EGFLFFFFTI LTAFWAGSSF VTFLSGVVSH VMIGFTVVVA
601: ILAYFLLFSG FFISRDRIPL YWIWFHYLSL VKYPYEGVLQ NEFEDPTKCF VRGIQMFDNS PLGQVPTAVK ISLLKSMSGV LGINVTAETC VTTGIDILKQ
701: QGITEISKWN CLWITVAWGF FFRVLFYFTL LIGSKNKRR

Arabidopsis Description

ABCG20ABC transporter G family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFG8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.