Factsheet for PGSC0003DMT400050007

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097430.2.1	Tomato	cytosol, nucleus	97.48	96.78
VIT_17s0000g02200.t01	Wine grape	cytosol	63.82	75.32
GSMUA_Achr9P27200_001	Banana	cytosol, peroxisome, plasma membrane	57.81	74.57
KRH60557	Soybean	cytosol	70.79	73.72
KRH41868	Soybean	cytosol	69.59	72.92
HORVU5Hr1G060690.4	Barley	mitochondrion	61.9	71.03
TraesCS5B01G203200.1	Wheat	cytosol	66.59	63.61
OQU80214	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	66.23	62.83
TraesCS5D01G211000.1	Wheat	cytosol	66.35	62.73
Os09t0401100-01	Rice	extracellular	64.66	61.56
Zm00001d024075_P001	Maize	cytosol	65.87	61.44
TraesCS5A01G205100.1	Wheat	mitochondrion	66.35	61.13
PGSC0003DMT400084876	Potato	cytosol	38.94	44.44
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	35.34	40.61
PGSC0003DMT400029838	Potato	extracellular	33.53	40.14
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	34.25	39.36
PGSC0003DMT400061466	Potato	plasma membrane	33.41	37.52
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	23.8	32.57
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	24.76	32.14
PGSC0003DMT400032370	Potato	plasma membrane	23.8	31.94
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	22.6	31.54
PGSC0003DMT400062852	Potato	plastid	22.96	28.9
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	20.31	28.03
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	20.31	27.57
PGSC0003DMT400039671	Potato	plasma membrane	18.03	26.98
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	20.55	26.47
PGSC0003DMT400039676	Potato	plasma membrane	19.95	26.39
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	20.31	25.53
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	20.67	25.48
PGSC0003DMT400054994	Potato	plastid	21.15	24.24
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	20.79	23.93
PGSC0003DMT400002062	Potato	cytosol	19.71	21.58

Protein Annotations

EntrezGene:102586815	MapMan:26.9.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1BPN8	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400019430	PGSC:PGSC0003DMG400019430
EnsemblPlants:PGSC0003DMT400050007	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF180	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002963A1C	RefSeq:XP_006347757.1	SEG:seg	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400019430]

Coordinates

chr1:-:75147153..75150194

Molecular Weight (calculated)

93967.3 Da

IEP (calculated)

9.139

GRAVY (calculated)

-0.096

Length

832 amino acids

Sequence
(BLAST)

001: MAKFKRTDTN RSLETLLDLD KSAQLNKING VNLAKQPTRK LIPGHGLEFT NLSYSVTKKV KKDGVWINRE AYLLNDISGQ ALRGEIMAIM GPSGAGKSTF
101: LDAIAGRIAR GSLEGTVRID GKSVTTSYMK MISSYVMQDD QLFPMLTVYE TFMFAAEVRL PPSISRAEKK KRVHELLEQL GLTSATHTYI GDEGRRGVSG
201: GERRRVSIGI DIIHKPSLLF LDEPTSGLDS TSAYSVVEKV KDIAKSGSIV LMTIHQPSFR IQMLLDRITV LARGRLVYLG SPTGVAAFLA GFARPVPDGE
301: NSLEYLLDVI KEYDESTVGL DPLVLYQRDG IKPDQTAKTP LRKPPKTPRA PRTPYAKSPW TKHISLRSSH FSVGNMNSQR DPKDQSESNV DSFGYDDEDD
401: EEDFDNSLER KVPQTPMSMQ SGIHPRLASH FYKDFSVWLY NGVKGTPLRP PTWNHGGRTQ ISGAKSSMSS GHPFPMSQQT PSRVKTPVVS AIFTPGREGI
501: EYSSYNPSYE EVFEIEEVLD EPVHRHKFAN PWLREVIVLC WRTTLNVIRT PELFLSREIV LTVMGLVLSS FFRRLDHFDF TTINHLLNFY IFTICLVFFS
601: SNDAVPTFIQ ERFIFIRETS HNAYRASSYV ISSLIVYLPF FAIQAFTFAA ITQYILRINS SILSFWIILY SSLITSNAYV MLVSALVPSY ITGYAIVIAT
701: TALFFLTCGF FLKRTQIPLV WRWLHYISAI KYPFEALLIN EFKGTKNCYN GDLADLSPGP LGDVKISQLH KDSIARGDLS QNCTLIGEDV LFSMDITKEN
801: IWLDIVILLA WGVLYRLFFY LVLRFYSKNE RK

Best Arabidopsis Sequence Match ( AT2G37360.1 )
(BLAST)

001: MSGLLGKSSP AKRVDGNNDL PMYYVNPMSV EPQGRPSDTT RVSVTFAEHL MNVEDARNDE SASSRALGIA SPINSAASSF NSWASAPASS ISSSPFVLSF
101: TDLTYSVKIQ KKFNPLACCR RSGNDSSVNT KILLNGISGE AREGEMMAVL GASGSGKSTL IDALANRIAK DSLRGSITLN GEVLESSMQK VISAYVMQDD
201: LLFPMLTVEE TLMFSAEFRL PRSLSKKKKK ARVQALIDQL GLRSAAKTVI GDEGHRGVSG GERRRVSIGN DIIHDPIILF LDEPTSGLDS TSAYMVIKVL
301: QRIAQSGSIV IMSIHQPSYR IMGLLDQLIF LSKGNTVYSG SPTHLPQFFS EFKHPIPENE NKTEFALDLI RELEYSTEGT KPLVEFHKQW RAKQAPSYNN
401: NNKRNTNVSS LKEAITASIS RGKLVSGATN NNSSNLTPSF QTFANPFWIE MIVIGKRAIL NSRRQPELLG MRLGAVMVTG IILATMFTNL DNSPKGAQER
501: LGFFAFAMST TFYTCAEAIP VFLQERYIFM RETAYNAYRR SSYVLSQSII SIPALIVLSA SFAATTFWAV GLDGGANGFF FFYFTILASF WAGSSFVTFL
601: SGVIPNVMLG FTVVVAILAY FLLFSGFFIS RDRIPVYWLW FHYISLVKYP YEGVLQNEFQ NPTRCFARGV QLFDNSPLGE FPNDVKVNLL KSMSGVLGTN
701: VTAETCVTTG IDILKQQGIT DISKWNCLWI TVAWGFFFRV LFYFTLLIGS KNKRK

Arabidopsis Description

ABCG2ABCG2 [Source:UniProtKB/TrEMBL;Acc:A0A178VW33]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.