Factsheet for PGSC0003DMT400047547

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	94.71	95.73
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	85.35	87.46
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	76.74	77.32
KRH28987	Soybean	cytosol, peroxisome, plasma membrane	76.44	76.67
KRH07778	Soybean	cytosol, peroxisome, plasma membrane	75.23	76.5
KRH76470	Soybean	cytosol, peroxisome, plasma membrane	76.13	76.48
AT1G31770.1	Thale cress	cytosol, nucleus, peroxisome	73.87	75.46
KRH07253	Soybean	cytosol, peroxisome, plasma membrane	74.62	75.3
CDY49155	Canola	cytosol, peroxisome, plasma membrane	73.56	75.04
Bra033878.1-P	Field mustard	cytosol, peroxisome, plastid	72.21	74.57
CDY47690	Canola	cytosol, peroxisome, plastid	72.21	74.57
CDY50951	Canola	cytosol, peroxisome, plastid	72.21	74.57
CDY12299	Canola	cytosol, peroxisome, plasma membrane	73.26	68.12
Bra023202.1-P	Field mustard	cytosol, peroxisome, plasma membrane	73.56	66.99
CDY12359	Canola	cytosol, nucleus, plasma membrane	28.4	62.46
GSMUA_Achr2P04580_001	Banana	plasma membrane	55.74	61.6
TraesCS4A01G370500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	61.03	59.32
TraesCS7A01G071700.1	Wheat	plastid	60.42	58.74
TraesCS7D01G067300.1	Wheat	cytosol, nucleus, plasma membrane, plastid	60.73	58.52
HORVU7Hr1G014870.1	Barley	cytosol, peroxisome, plasma membrane	60.27	58.25
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	56.5	55.41
PGSC0003DMT400039671	Potato	plasma membrane	45.92	54.68
GSMUA_Achr1P10650_001	Banana	cytosol, peroxisome, plasma membrane	60.88	54.09
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	49.55	53.51
Zm00001d024497_P001	Maize	plastid	58.46	53.23
Os08t0167000-01	Rice	cytosol, nucleus, plasma membrane	60.57	52.97
EES13415	Sorghum	plastid	59.06	52.2
PGSC0003DMT400039676	Potato	plasma membrane	49.24	51.83
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	43.96	48.26
PGSC0003DMT400054994	Potato	plastid	45.17	41.18
PGSC0003DMT400002062	Potato	cytosol	41.84	36.45
PGSC0003DMT400032370	Potato	plasma membrane	26.59	28.39
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	25.08	27.3
PGSC0003DMT400062852	Potato	plastid	26.43	26.48
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	23.57	26.17
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	27.79	25.45
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	24.32	25.12
PGSC0003DMT400029838	Potato	extracellular	25.53	24.32
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	26.59	24.31
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	25.83	23.62
PGSC0003DMT400084876	Potato	cytosol	25.98	23.59
PGSC0003DMT400061466	Potato	plasma membrane	25.53	22.81
PGSC0003DMT400050007	Potato	cytosol	25.53	20.31

Protein Annotations

EntrezGene:102600750	MapMan:11.4.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1BKZ5	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400018479
PGSC:PGSC0003DMG400018479	EnsemblPlants:PGSC0003DMT400047547	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF213
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002964506	RefSeq:XP_006361227.1	SEG:seg

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400018479]

Coordinates

chr8:-:3599195..3602526

Molecular Weight (calculated)

73858.1 Da

IEP (calculated)

9.155

GRAVY (calculated)

0.073

Length

662 amino acids

Sequence
(BLAST)

001: MHLHCVAPNP EKGGTDLMEA STNSPNSSKQ YDKSCLGFPV QIKSQQSFLQ KAMYPITLKF EEIVYKISQE NKGMCCGGPS NTKEKTILNG VTGTVYPGEM
101: LAMLGPSGSG KTTLLTALGG RLSGKLSGKI TYNSQPFSGS IKRRTGFVSQ DDVLYPHLTV IETLLFTALL RLPQSLDRVE KVRHVEHVIA ELGLNKCRNS
201: MIGGSLFRGI SGGEKKRVSI GQEMLINPSI LLLDEPTSGL DSTTALRILN TVKRLASGGR TVITTIHQPS SRLYHMFDKV VLLSEGCPIY YGPASTALEY
301: FSSIGFSISI TINPADLLLD LANGLSGIGP ETKNANDQGD SIEQEKKLVR EALISAYEKN ISTRLKTEVC SLDNSSYSYT KDVSTRNGVK LEQWCTSWMH
401: QFKILLMRGL RERRHESFNR LRIFQVISVA FLAGLLWWHT PTSHIEDRIA MLFFFAVFWG FYPLYNAVFT FPQERRMLIK ERSSGMYRLS SYFLAKTVVD
501: LPLELALPTA FTFILYWMGG LKPDPTTFIL SLLVVLYNVL VSQSLGLAFG ALLMDVKQAT TLASVTTLVF LIAGGYYIQQ IPPFIVWLKY LSYSYYSYKL
601: LLGVQYNDND YYECSKGVYC QVANLPAIES VGLNNMWIDV SVMAVMLVGY RVVAYLALTR VR

Best Arabidopsis Sequence Match ( AT1G31770.1 )
(BLAST)

001: MPQNCIAPRP EEDGGVMVQG LPDMSDTQSK SVLAFPTITS QPGLQMSMYP ITLKFEEVVY KVKIEQTSQC MGSWKSKEKT ILNGITGMVC PGEFLAMLGP
101: SGSGKTTLLS ALGGRLSKTF SGKVMYNGQP FSGCIKRRTG FVAQDDVLYP HLTVWETLFF TALLRLPSSL TRDEKAEHVD RVIAELGLNR CTNSMIGGPL
201: FRGISGGEKK RVSIGQEMLI NPSLLLLDEP TSGLDSTTAH RIVTTIKRLA SGGRTVVTTI HQPSSRIYHM FDKVVLLSEG SPIYYGAASS AVEYFSSLGF
301: STSLTVNPAD LLLDLANGIP PDTQKETSEQ EQKTVKETLV SAYEKNISTK LKAELCNAES HSYEYTKAAA KNLKSEQWCT TWWYQFTVLL QRGVRERRFE
401: SFNKLRIFQV ISVAFLGGLL WWHTPKSHIQ DRTALLFFFS VFWGFYPLYN AVFTFPQEKR MLIKERSSGM YRLSSYFMAR NVGDLPLELA LPTAFVFIIY
501: WMGGLKPDPT TFILSLLVVL YSVLVAQGLG LAFGALLMNI KQATTLASVT TLVFLIAGGY YVQQIPPFIV WLKYLSYSYY CYKLLLGIQY TDDDYYECSK
601: GVWCRVGDFP AIKSMGLNNL WIDVFVMGVM LVGYRLMAYM ALHRVKLR

Arabidopsis Description

ABCG14ABC transporter G family member 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6W5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.