Factsheet for PGSC0003DMT400059944

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	91.58	95.6
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.58	70.24
KRH53911	Soybean	cytosol, peroxisome, plasma membrane	66.46	68.71
CDX89610	Canola	cytosol, peroxisome, plasma membrane	64.59	68.43
KRH59586	Soybean	cytosol, peroxisome, plasma membrane	69.27	68.41
CDX93119	Canola	cytosol, peroxisome, plasma membrane	64.43	68.26
Bra013141.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.46	67.41
KRH40938	Soybean	cytosol, peroxisome, plasma membrane	68.64	67.28
GSMUA_Achr8P32630_001	Banana	cytosol, peroxisome, plasma membrane	54.45	67.24
KRH64027	Soybean	extracellular	66.3	66.41
AT2G13610.1	Thale cress	cytosol, peroxisome, plasma membrane	65.99	65.18
GSMUA_Achr9P00310_001	Banana	cytosol	49.77	61.7
Zm00001d009492_P001	Maize	mitochondrion, plasma membrane	22.0	51.27
PGSC0003DMT400032370	Potato	plasma membrane	46.33	47.9
EES01897	Sorghum	cytosol, plasma membrane, plastid	50.08	47.7
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	44.46	46.88
TraesCS2A01G574700.1	Wheat	plasma membrane	47.43	46.77
TraesCS2B01G612200.1	Wheat	plasma membrane	49.14	46.67
TraesCS2D01G585300.1	Wheat	plasma membrane	48.99	46.59
HORVU2Hr1G124860.3	Barley	nucleus, peroxisome, plastid	39.47	45.67
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	39.0	41.95
Zm00001d026706_P005	Maize	plasma membrane	48.83	41.73
PGSC0003DMT400062852	Potato	plastid	40.72	39.49
PGSC0003DMT400029838	Potato	extracellular	32.14	29.64
PGSC0003DMT400039671	Potato	plasma membrane	25.59	29.5
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	26.99	28.69
PGSC0003DMT400061466	Potato	plasma membrane	32.76	28.34
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	31.98	28.31
PGSC0003DMT400084876	Potato	cytosol	31.51	27.71
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	31.05	27.49
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	26.05	27.24
PGSC0003DMT400039676	Potato	plasma membrane	26.68	27.19
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	26.21	24.89
PGSC0003DMT400050007	Potato	cytosol	32.14	24.76
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	24.8	24.61
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	25.12	24.32
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	26.05	23.1
PGSC0003DMT400054994	Potato	plastid	25.74	22.73
PGSC0003DMT400002062	Potato	cytosol	26.37	22.24

Protein Annotations

EntrezGene:102602360	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1C4Y1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400023322	PGSC:PGSC0003DMG400023322
EnsemblPlants:PGSC0003DMT400059944	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF230	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295F321	RefSeq:XP_006345760.1	SEG:seg	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400023322]

Coordinates

chr5:-:51897601..51899687

Molecular Weight (calculated)

72190.7 Da

IEP (calculated)

9.153

GRAVY (calculated)

0.287

Length

641 amino acids

Sequence
(BLAST)

001: MKKQGCEIEA IGINYTIYTH KRETPFSFFS RKQHHKCIKG VQELEKGDTN NNPKSIRHVL KDVNCRAKTG EILAIVGPSG AGKSTFLEVL AGKIEPQSGS
101: IFVNQKPVDK ARFKKISGYV TQKDTLFPLL TVEETLSFSA KLRLKLAPKE LSSRVKCLIQ ELGLEHVAGA RIGDDRIRGI SGGERRRVSI GVELIHDPGV
201: LILDEPTSGL DSTSALQIID MLKTMAVTRD RTIILSIHQP CFRIMKLFNS ILLLANGTIL HHGTIEQLSL RLILLGLDLP FHVNILEFAI ESIDIIQKQN
301: HTLLPQSALM IKNSGKFTLQ QLFQESKLIN EDSLSMSMSM PMPIPMPIHV GFANSSLQEI VILTIRFWKI IYRTKELFGF KTLQMLLSGL VLGSIFYNLE
401: DDLVGAQARV GLFAFILTYL LSSTTEALPI FLQEREILMK ETSCGSYRVS SYVIANSLVY LPFLLILALL FSTPLYWMVG LNKQFMAFMH FLLLIWLILY
501: TANSIVVCCS ALVPNFIIGN SLVCAMMGSC ALFSGYFVSK NEIPNYWIVM HYVSLFKYPF EGFLINEFSG SGKCLQYMFG MCLASGEQVL KEEGYGGEES
601: RRKNLLIMVC FIMLYRFISY VILRIRCTSQ GGFKKIFISI R

Best Arabidopsis Sequence Match ( AT2G13610.1 )
(BLAST)

001: MEKQGCEIEA LDIDYNIFVR KINVNPFGIF RRKPRPEADQ PVKTEEESLK LEDETGNKVK HVLKGVTCRA KPWEILAIVG PSGAGKSSLL EILAARLIPQ
101: TGSVYVNKRP VDRANFKKIS GYVTQKDTLF PLLTVEETLL FSAKLRLKLP ADELRSRVKS LVHELGLEAV ATARVGDDSV RGISGGERRR VSIGVEVIHD
201: PKVLILDEPT SGLDSTSALL IIDMLKHMAE TRGRTIILTI HQPGFRIVKQ FNSVLLLANG STLKQGSVDQ LGVYLRSNGL HPPLHENIVE FAIESIESIT
301: KQQRLQESRR AAHVLTPQTT LQEKRSEDSQ GESKSGKFTL QQLFQQTRVA DVGTMNIATE FTRDFANSRL EETMILTHRF SKNIFRTKEL FACRTVQMLG
401: SGIVLGLIFH NLKDDLKGAR ERVGLFAFIL TFLLTSTIEA LPIFLQEREI LMKETSSGSY RVSSYAVANG LVYLPFLLIL AILFSTPVYW LVGLNPSFMA
501: FLHFSLLIWL ILYTANSVVV CFSALVPNFI VGNSVISGVM GSFFLFSGYF ISNHEIPGYW IFMHYISLFK YPFEGFLINE FSKSNKCLEY GFGKCLVTEE
601: DLLKEERYGE ESRWRNVVIM LCFVLLYRFI SYVILRCRCS QRSFKTTLA

Arabidopsis Description

ABCG5ABC transporter G family member 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIT6]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.