Factsheet for PGSC0003DMT400039676

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	93.16	93.02
PGSC0003DMT400039671	Potato	plasma membrane	73.13	82.73
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	69.0	70.8
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	65.66	66.29
KRH22136	Soybean	cytosol, peroxisome, plasma membrane	60.89	61.08
KRH55354	Soybean	cytosol, peroxisome, plasma membrane	58.66	59.13
Bra019051.1-P	Field mustard	plasma membrane	58.82	58.08
CDY29837	Canola	plasma membrane	58.98	57.61
CDX92829	Canola	plasma membrane	58.98	57.61
CDY29304	Canola	cytosol, peroxisome, plasma membrane	58.35	57.52
Bra026352.1-P	Field mustard	cytosol, peroxisome, plasma membrane	58.35	57.52
CDX89252	Canola	cytosol, peroxisome, plasma membrane	58.35	57.52
GSMUA_Achr1P08870_001	Banana	cytosol, peroxisome, plasma membrane	55.8	57.07
AT4G27420.1	Thale cress	cytosol, peroxisome, plasma membrane	56.92	56.11
GSMUA_Achr2P02720_001	Banana	mitochondrion	49.92	52.77
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	52.31	50.93
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	53.58	49.93
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	51.83	49.24
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	45.15	47.1
PGSC0003DMT400054994	Potato	plastid	45.15	39.12
PGSC0003DMT400002062	Potato	cytosol	44.2	36.58
PGSC0003DMT400032370	Potato	plasma membrane	27.19	27.58
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	26.23	27.14
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	27.19	26.68
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	24.96	26.34
PGSC0003DMT400062852	Potato	plastid	27.03	25.72
PGSC0003DMT400029838	Potato	extracellular	28.3	25.61
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	29.09	25.28
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	29.09	25.28
PGSC0003DMT400061466	Potato	plasma membrane	29.09	24.7
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	27.03	23.51
PGSC0003DMT400084876	Potato	cytosol	26.55	22.91
PGSC0003DMT400050007	Potato	cytosol	26.39	19.95

Protein Annotations

EntrezGene:102598552	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1B8M3	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400015344	PGSC:PGSC0003DMG400015344
EnsemblPlants:PGSC0003DMT400039676	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF257	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295555C	RefSeq:XP_006359002.1	SEG:seg	:

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400015344]

Coordinates

chr12:+:808495..811827

Molecular Weight (calculated)

69917.4 Da

IEP (calculated)

8.493

GRAVY (calculated)

0.082

Length

629 amino acids

Sequence
(BLAST)

001: MEQEMENIES PLHIHHSKSE VIFDNTNRPI TLKFENVAYK IKLVKEGCLK NSSKSEEEKI ILKDVSGIVY PGEMLAILGP SGCGKTTLLT GLGGRLVKGH
101: LDGVITYNNN PFSSSMKRSI GFVTQDDVLY PHLTVYETLV FTALLRLPKT YSVEEKTAHC DAIIPQLGLT KCKDSIIGDS LLRGISGGER KRVSIGQEML
201: INPSLLLLDE PTSGLDSTTA LRIVSTLKDL ANGGRTVAMT IHQPSSRLFY MFDKVLLLSE GNPLYFGRGK DAMGYFSGIG FPPLVAMNPS DFLLDLSSGI
301: LSDDPRVLSD APREDPASIK QTLVTAFKTN LAKNLNEQLQ ESIDHQATEK LPEKKFSQWS NTWWQQFSVL LRRGMKERKH ESLSNLKVGE VLVMSFFSGL
401: LWWKSNNIQD QTGLLFFYTS FWEFYSVFQG IFTFPQERMM LEKERSSGMY RLSAYFMAMT VGDLPMELVL PTISTVITYW MAGLKPSAGR FFSTLFSLLY
501: NVLVSQSLGL AIGAMVMDEK SATVLALVIL ISFTLAGGFY VQHVPRFIAW IKHVSITQYA YKLLLGSQYS PGETYSCGLN ATCLVEDSPS IKTIGLGGKG
601: ISIVALAVML FGFRFLAYVA LMRIGVTKK

Best Arabidopsis Sequence Match ( AT4G27420.1 )
(BLAST)

001: MDNQEVSMDV ETPIAKTNDD RSLPFSIFKK ANNPVTLKFE NLVYTVKLKD SQGCFGKNDK TEERTILKGL TGIVKPGEIL AMLGPSGSGK TSLLTALGGR
101: VGEGKGKLTG NISYNNKPLS KAVKRTTGFV TQDDALYPNL TVTETLVFTA LLRLPNSFKK QEKIKQAKAV MTELGLDRCK DTIIGGPFLR GVSGGERKRV
201: SIGQEILINP SLLFLDEPTS GLDSTTAQRI VSILWELARG GRTVVTTIHQ PSSRLFYMFD KLLLLSEGNP VYFGLGSNAM DYFASVGYSP LVERINPSDF
301: LLDIANGVGS DESQRPEAMK AALVAFYKTN LLDSVINEVK GQDDLCNKPR ESSRVATNTY GDWPTTWWQQ FCVLLKRGLK QRRHDSFSGM KVAQIFIVSF
401: LCGLLWWQTK ISRLQDQIGL LFFISSFWAF FPLFQQIFTF PQERAMLQKE RSSGMYRLSP YFLSRVVGDL PMELILPTCF LVITYWMAGL NHNLANFFVT
501: LLVLLVHVLV SGGLGLALGA LVMDQKSATT LGSVIMLTFL LAGGYYVQHV PVFISWIKYV SIGYYTYKLL ILGQYTANEL YPCGDNGKLR CHVGDFEGIK
601: HIGFNSGLVS ALALTAMLVV YRVIAYIALT RIGKTKSG

Arabidopsis Description

ABCG9ABCG9 [Source:UniProtKB/TrEMBL;Acc:A0A178V178]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.