Factsheet for Solyc12g013640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039676	Potato	plasma membrane	93.02	93.16
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	79.21	79.46
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	67.78	69.66
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	65.24	65.97
KRH22136	Soybean	cytosol, peroxisome, plasma membrane	60.63	60.92
KRH55354	Soybean	cytosol, peroxisome, plasma membrane	58.57	59.13
Bra019051.1-P	Field mustard	plasma membrane	59.05	58.4
CDY29837	Canola	plasma membrane	59.21	57.92
CDX92829	Canola	plasma membrane	59.21	57.92
CDY29304	Canola	cytosol, peroxisome, plasma membrane	58.25	57.52
Bra026352.1-P	Field mustard	cytosol, peroxisome, plasma membrane	58.25	57.52
CDX89252	Canola	cytosol, peroxisome, plasma membrane	58.25	57.52
GSMUA_Achr1P08870_001	Banana	cytosol, peroxisome, plasma membrane	54.92	56.26
AT4G27420.1	Thale cress	cytosol, peroxisome, plasma membrane	56.83	56.11
GSMUA_Achr2P02720_001	Banana	mitochondrion	50.0	52.94
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	52.22	50.93
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	51.75	49.77
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	53.02	49.48
Solyc11g018690.1.1	Tomato	cytosol	26.51	48.83
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	20.63	44.83
Solyc01g006720.2.1	Tomato	plastid	44.92	39.09
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	44.44	38.78
Solyc07g065780.1.1	Tomato	mitochondrion	26.67	37.75
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	27.3	28.01
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	27.46	27.86
Solyc07g053300.1.1	Tomato	cytosol	26.19	27.14
Solyc03g007690.1.1	Tomato	plastid	24.92	26.3
Solyc03g113690.1.1	Tomato	plastid	27.3	26.14
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	28.25	24.79
Solyc04g010210.1.1	Tomato	extracellular	28.1	24.79
Solyc05g054890.2.1	Tomato	cytosol	29.05	24.4
Solyc09g005970.1.1	Tomato	plasma membrane	28.57	24.39
Solyc05g008350.2.1	Tomato	nucleus, plastid	27.46	24.37
Solyc09g098410.1.1	Tomato	nucleus	26.35	22.77
Solyc01g097430.2.1	Tomato	cytosol, nucleus	26.35	19.81

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	UniProt:K4DCP9	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF257	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g013640.1
EnsemblPlants:Solyc12g013640.1.1	TMHMM:TMhelix	UniParc:UPI000276A328	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:4477879..4481200

Molecular Weight (calculated)

70124.6 Da

IEP (calculated)

7.920

GRAVY (calculated)

0.121

Length

630 amino acids

Sequence
(BLAST)

001: MEQEIMENIE NHIHIDHSKS EVIFDNTNRP ITLKFENVAY KIKLVKEGCL KNSSKSEEDK IILKGVSGIV SPGEMLAILG PSGCGKTTLL TGLGGRLVNG
101: HLDGAITYNN NPFSSSMKRS IGFVTQDDVL YPHLTVYETL VFTALLRLPK TYSIEEKIAH ADAIIPQLGL TKCKDSIIGD SLLRGISGGE RKRVSIGQEM
201: LINPSLLLLD EPTSGLDSTT ALRIVSTLKG LANGVRTVAM TIHQPSSRLY YMFDKVLLLS EGNPLYFGRG EDAMGYFSGI GFPPLVAMNP SDFLLDLSSG
301: ILSDDPRVLS DAPKEDPASI KKTLVLAFKT NLAENLNEQL QESIDQQATE KLPDKKFSQW ANTWWQQFTV LLRRGMKERK HESFSTLKVT EVLVMSFFAG
401: LLWWKSNNIQ DQTGLLFFYT SFWEFYSVFQ GIFTFPQERM MLEKERSSGM YRLSAYFVAM TVGDLPMELV LPTISTLITY WMAGLKPSAW RFFSTLFSLL
501: YNVLVSQSLG LAIGAMVMDE QSATVFALVI LISFTLAGGF YVHHVPKFIA WIKHVSITQY AYKLLLGSQY SPGETYSCGI NATCLVEDFP SIKTIGLGGK
601: VISIVALAIM LLGYRFLAYI ALKRIGVTKK

Best Arabidopsis Sequence Match ( AT4G27420.1 )
(BLAST)

001: MDNQEVSMDV ETPIAKTNDD RSLPFSIFKK ANNPVTLKFE NLVYTVKLKD SQGCFGKNDK TEERTILKGL TGIVKPGEIL AMLGPSGSGK TSLLTALGGR
101: VGEGKGKLTG NISYNNKPLS KAVKRTTGFV TQDDALYPNL TVTETLVFTA LLRLPNSFKK QEKIKQAKAV MTELGLDRCK DTIIGGPFLR GVSGGERKRV
201: SIGQEILINP SLLFLDEPTS GLDSTTAQRI VSILWELARG GRTVVTTIHQ PSSRLFYMFD KLLLLSEGNP VYFGLGSNAM DYFASVGYSP LVERINPSDF
301: LLDIANGVGS DESQRPEAMK AALVAFYKTN LLDSVINEVK GQDDLCNKPR ESSRVATNTY GDWPTTWWQQ FCVLLKRGLK QRRHDSFSGM KVAQIFIVSF
401: LCGLLWWQTK ISRLQDQIGL LFFISSFWAF FPLFQQIFTF PQERAMLQKE RSSGMYRLSP YFLSRVVGDL PMELILPTCF LVITYWMAGL NHNLANFFVT
501: LLVLLVHVLV SGGLGLALGA LVMDQKSATT LGSVIMLTFL LAGGYYVQHV PVFISWIKYV SIGYYTYKLL ILGQYTANEL YPCGDNGKLR CHVGDFEGIK
601: HIGFNSGLVS ALALTAMLVV YRVIAYIALT RIGKTKSG

Arabidopsis Description

ABCG9ABCG9 [Source:UniProtKB/TrEMBL;Acc:A0A178V178]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.