Factsheet for Solyc09g098410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084876	Potato	cytosol	98.22	98.22
KRH74446	Soybean	cytosol, peroxisome, plasma membrane	65.02	70.64
KRH39507	Soybean	cytosol	69.82	69.73
TraesCS3B01G285600.1	Wheat	cytosol, peroxisome, plasma membrane	62.41	63.73
GSMUA_Achr4P27670_001	Banana	cytosol, peroxisome, plasma membrane	55.42	63.62
TraesCS3D01G254600.1	Wheat	cytosol, peroxisome, plasma membrane	62.41	63.11
TraesCS3A01G253700.1	Wheat	cytosol, peroxisome, plasma membrane	62.41	63.11
Os07t0191600-04	Rice	nucleus, peroxisome, plasma membrane	59.81	62.82
Zm00001d043722_P001	Maize	cytosol, peroxisome, plasma membrane	63.51	62.74
EES03493	Sorghum	cytosol, peroxisome, plasma membrane	62.83	62.57
Solyc01g097430.2.1	Tomato	cytosol, nucleus	44.17	38.42
HORVU3Hr1G066220.1	Barley	plastid	40.33	36.89
Solyc04g010210.1.1	Tomato	extracellular	34.57	35.29
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	34.71	35.24
Solyc09g005970.1.1	Tomato	plasma membrane	35.25	34.82
Solyc05g054890.2.1	Tomato	cytosol	35.53	34.53
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	27.71	32.53
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	27.16	32.25
Solyc03g007690.1.1	Tomato	plastid	26.2	31.99
Solyc07g053300.1.1	Tomato	cytosol	26.47	31.74
Solyc03g113690.1.1	Tomato	plastid	26.47	29.33
Solyc11g018690.1.1	Tomato	cytosol	13.72	29.24
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	23.46	26.47
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	22.77	26.35
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	23.18	25.8
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	23.87	25.78
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	21.95	25.48
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	21.26	25.29
Solyc01g006720.2.1	Tomato	plastid	23.87	24.03
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	22.77	22.99
Solyc05g008350.2.1	Tomato	nucleus, plastid	21.26	21.83
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	8.64	21.72
Solyc07g065780.1.1	Tomato	mitochondrion	12.07	19.78

Protein Annotations

MapMan:26.9.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
UniProt:K4CX11	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF180	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g098410.1	EnsemblPlants:Solyc09g098410.1.1
TMHMM:TMhelix	UniParc:UPI000276C35F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:72228564..72231344

Molecular Weight (calculated)

81523.3 Da

IEP (calculated)

9.455

GRAVY (calculated)

-0.040

Length

729 amino acids

Sequence
(BLAST)

001: MGHVVDIGKP INYTGGLEFS SLTYRVTKKM KDENGKWLSQ EVDLLHQITG YAPKGCITAV MGPSGAGKST LLDGLAGRIA SGSLRGKVSM GGLDMSPSFI
101: KGSSAYIMQD DRLFPMLTVY ETFMFAADFK LGSLSRTEKQ DRVERLIEKL GLSSTRNTYI GDEGTRGVSG GERRRVSIGV DIIHGPSLLF LDEPTSGLDS
201: TSAHSVIEKV HDIARAGSTV ILTIHQPSHR IQLLLDHLII LARGQLMYQG APNDVSHHLV RMGRKVPKNE SSIEHLIDVI QQYDQSELGV EAVAAFALTG
301: MKPPPIGAAA HEMSVSTVLP SPVRPSHRAK HQVVEAQGRD KSSKRLRLQT HAQDDTGFDH SVRSPWNTSK SWSASRSGVL QSIGFSPARR NDHRSPSVMG
401: SSPGCYAYST EIVQSTPTPH SSDYTVNEND YLTPNDFGHD INHSFHDLGP KFVNSFFSET WILMRRNFIN IMRTPELFLS RLVVLSAMGI MMATMFLHPK
501: ENLQGITNRL SFFIFTCTLF FFSSNDAVPA FIQERFVFIR ETSHNKYRAS SYTIAGLVTY LPFLALQAAV YAVIVWFALS LRGPFIYFLV ILFMSLLSTN
601: SFVIFVSSVV PNYILGYAAV IAFTALFFLF CGYFLNSNDM PSYWKWMNYV STMTYPYEGL LMNQYQTNES FGKDPLGRDV TGFGILKSLN ISLDPTKKWE
701: KVYIMLGWAV FYRILFYIAL RLFSKNQRK

Best Arabidopsis Sequence Match ( AT2G39350.1 )
(BLAST)

001: MARIVAANDD DSMELNTISS IHDSTLGQLL KNVSDVRKMA IGDETPVHES LNQDYNDGYM RTVPFVLSFD NLTYNVSVRP KLDFRNLFPR RRTEDPEIAQ
101: TARPKTKTLL NNISGETRDG EIMAVLGASG SGKSTLIDAL ANRIAKGSLK GTVKLNGETL QSRMLKVISA YVMQDDLLFP MLTVEETLMF AAEFRLPRSL
201: PKSKKKLRVQ ALIDQLGIRN AAKTIIGDEG HRGISGGERR RVSIGIDIIH DPILLFLDEP TSGLDSTSAF MVVKVLKRIA QSGSIVIMSI HQPSHRVLGL
301: LDRLIFLSRG HTVYSGSPAS LPRFFTEFGS PIPENENRTE FALDLIRELE GSAGGTRGLI EFNKKWQEMK KQSNRQPPLT PPSSPYPNLT LKEAIAASIS
401: RGKLVSGGES VAHGGATTNT TTLAVPAFAN PMWIEIKTLS KRSMLNSRRQ PELFGIRIAS VVITGFILAT VFWRLDNSPK GVQERLGFFA FAMSTMFYTC
501: ADALPVFLQE RYIFMRETAY NAYRRSSYVL SHAIVSFPSL IFLSVAFAAT TYWAVGLDGG LTGLLFYCLI ILASFWSGSS FVTFLSGVVP SVMLGYTIVV
601: AILAYFLLFS GFFINRNRIP DYWIWFHYMS LVKYPYEAVL QNEFSDATKC FVRGVQIFDN TPLGELPEVM KLKLLGTVSK SLGVTISSTT CLTTGSDILR
701: QQGVVQLSKW NCLFITVAFG FFFRILFYFT LLLGSKNKRR

Arabidopsis Description

ABCG1ABC transporter G family member 1 [Source:UniProtKB/Swiss-Prot;Acc:O80946]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.