Factsheet for Solyc01g097430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050007	Potato	cytosol	96.78	97.48
VIT_17s0000g02200.t01	Wine grape	cytosol	63.37	75.32
GSMUA_Achr9P27200_001	Banana	cytosol, peroxisome, plasma membrane	57.4	74.57
KRH60557	Soybean	cytosol	69.93	73.34
KRH41868	Soybean	cytosol	68.74	72.54
HORVU5Hr1G060690.4	Barley	mitochondrion	61.34	70.9
TraesCS5B01G203200.1	Wheat	cytosol	66.11	63.61
TraesCS5D01G211000.1	Wheat	cytosol	66.11	62.95
OQU80214	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	65.63	62.71
Os09t0401100-01	Rice	extracellular	64.56	61.9
Zm00001d024075_P001	Maize	cytosol	65.39	61.44
TraesCS5A01G205100.1	Wheat	mitochondrion	66.11	61.35
Solyc09g098410.1.1	Tomato	nucleus	38.42	44.17
Solyc04g010210.1.1	Tomato	extracellular	33.53	39.36
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	33.29	38.86
Solyc05g054890.2.1	Tomato	cytosol	34.49	38.53
Solyc09g005970.1.1	Tomato	plasma membrane	32.58	36.99
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	24.46	33.39
Solyc07g053300.1.1	Tomato	cytosol	23.39	32.24
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	23.39	31.56
Solyc03g007690.1.1	Tomato	plastid	22.32	31.32
Solyc11g018690.1.1	Tomato	cytosol	12.41	30.41
Solyc03g113690.1.1	Tomato	plastid	22.67	28.88
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	20.41	26.47
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	19.33	26.43
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	19.81	26.35
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	19.69	26.27
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	20.05	25.65
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	20.64	25.63
Solyc01g006720.2.1	Tomato	plastid	21.24	24.59
Solyc05g008350.2.1	Tomato	nucleus, plastid	20.41	24.08
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	19.57	22.71
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	7.52	21.72
Solyc07g065780.1.1	Tomato	mitochondrion	11.46	21.57

Protein Annotations

MapMan:26.9.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
UniProt:K4B0D0	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF180	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g097430.2	EnsemblPlants:Solyc01g097430.2.1
TMHMM:TMhelix	UniParc:UPI0002768025	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:88285325..88288468

Molecular Weight (calculated)

94831.5 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.115

Length

838 amino acids

Sequence
(BLAST)

001: MAKFKRTDTN RSLETLLDLD KSAQLKKING KNLSKQPTRK LIPGHGLEFT NLSYSVTKKV KKDGVWINRE AYLLNDISGQ ALRGEIMAIM GPSGAGKSTF
101: LDAIAGRIAR GSLEGSVRIE GKPVKSLYMY HHVTTSYMKM ISSYVMQDDQ LFPMLTVHET FMFAAEVRLP PSISRAEKKK RVHELLEQLG LTSATHTYIG
201: DEGRRGVSGG ERRRVSIGID IIHKPSLLFL DEPTSGLDST SAHSVVEKVK DIAKSGSIVL MTIHQPSFRI QMLLDRITVL ARGRLVYLGS PTGVAAFLAG
301: FARPVPDGEN SLEYLLDVIK EYDESTVGLD PLVLYQRDGI KPDQAAKTPL RKPPKTPRAP RTPYAKSPWT KHISLRSSHF SVGNMNSQRD PKDQSESNVN
401: SFGYDDEDDD EDFDNSLERK VPQTPMSMQS GIHPRLASHF YKDFSVWLYN GVKGTPLRPP TWNHGGRTQI SGAKSSMSSG HPFPMSQQTP SRVKTPVVSA
501: IFTPVREGIE YSSYNPSYEE VFEIEEVLDE PVHRHKFANP WLREVIVLCW RTTLNVIRTP ELFLSREIVL TVMGLVLSSF FRRLNHFDFT TINHLLNFYI
601: FTICLVFFSS NDAVPTFIQE RFIFIRETSH NAYRSSSYVI SSLIVYLPFF AIQAFTFAAI TQYILRINSS ILSFWIILYS SLITSNAYVM LVSALVPSYI
701: TGYAIVISTT ALFFLTCGFF LKRTQIPLVW RWLHYISAIK YPFEALLINE FKGTKNCYNG DLADLSPGPL GDVKISQLHK DSIDLSQNCT LIGEDVLFSM
801: DISKENIWLD IAILLAWGVL YRLFFYVVLR FYSKNERK

Best Arabidopsis Sequence Match ( AT2G37360.1 )
(BLAST)

001: MSGLLGKSSP AKRVDGNNDL PMYYVNPMSV EPQGRPSDTT RVSVTFAEHL MNVEDARNDE SASSRALGIA SPINSAASSF NSWASAPASS ISSSPFVLSF
101: TDLTYSVKIQ KKFNPLACCR RSGNDSSVNT KILLNGISGE AREGEMMAVL GASGSGKSTL IDALANRIAK DSLRGSITLN GEVLESSMQK VISAYVMQDD
201: LLFPMLTVEE TLMFSAEFRL PRSLSKKKKK ARVQALIDQL GLRSAAKTVI GDEGHRGVSG GERRRVSIGN DIIHDPIILF LDEPTSGLDS TSAYMVIKVL
301: QRIAQSGSIV IMSIHQPSYR IMGLLDQLIF LSKGNTVYSG SPTHLPQFFS EFKHPIPENE NKTEFALDLI RELEYSTEGT KPLVEFHKQW RAKQAPSYNN
401: NNKRNTNVSS LKEAITASIS RGKLVSGATN NNSSNLTPSF QTFANPFWIE MIVIGKRAIL NSRRQPELLG MRLGAVMVTG IILATMFTNL DNSPKGAQER
501: LGFFAFAMST TFYTCAEAIP VFLQERYIFM RETAYNAYRR SSYVLSQSII SIPALIVLSA SFAATTFWAV GLDGGANGFF FFYFTILASF WAGSSFVTFL
601: SGVIPNVMLG FTVVVAILAY FLLFSGFFIS RDRIPVYWLW FHYISLVKYP YEGVLQNEFQ NPTRCFARGV QLFDNSPLGE FPNDVKVNLL KSMSGVLGTN
701: VTAETCVTTG IDILKQQGIT DISKWNCLWI TVAWGFFFRV LFYFTLLIGS KNKRK

Arabidopsis Description

ABCG2ABCG2 [Source:UniProtKB/TrEMBL;Acc:A0A178VW33]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.