Factsheet for Solyc04g010210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029838	Potato	extracellular	89.22	91.65
Solyc04g010200.1.1	Tomato	cytosol, peroxisome, plasma membrane	87.68	87.19
Solyc05g054890.2.1	Tomato	cytosol	77.03	73.33
Bra005051.1-P	Field mustard	plastid	62.32	72.48
CDX74853	Canola	plastid	62.32	72.12
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.07	71.75
KRG92984	Soybean	cytosol, peroxisome, plasma membrane	73.11	69.6
AT5G13580.1	Thale cress	cytosol, peroxisome, plasma membrane	70.03	68.78
Bra008817.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	69.89	68.73
CDX69629	Canola	plastid	70.03	68.68
AT2G39350.1	Thale cress	cytosol	69.75	67.3
AT3G55090.1	Thale cress	cytosol, peroxisome, plasma membrane	69.19	67.12
CDY09810	Canola	plastid	70.03	66.49
Bra005048.1-P	Field mustard	cytosol, nucleus, plasma membrane	68.91	66.13
Solyc09g005970.1.1	Tomato	plasma membrane	67.51	65.31
GSMUA_Achr8P02140_001	Banana	cytosol, peroxisome, plasma membrane	63.31	64.02
GSMUA_Achr5P28450_001	Banana	plasma membrane	61.48	62.89
Os05t0120200-01	Rice	plasma membrane	59.24	60.52
HORVU5Hr1G021120.1	Barley	cytosol, peroxisome, plasma membrane	57.0	59.77
Zm00001d028689_P001	Maize	cytosol, peroxisome, plasma membrane	65.83	59.49
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	65.97	59.17
Zm00001d012438_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	61.2	58.82
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	56.02	58.74
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	56.02	58.74
Os05t0120000-00	Rice	plasma membrane	55.88	58.68
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	56.86	58.67
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	56.86	58.5
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	64.85	58.46
TraesCS5A01G078500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	55.74	58.44
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	60.92	58.39
TraesCS4A01G103400.1	Wheat	cytosol, peroxisome, plasma membrane	64.99	58.29
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	58.26	58.26
HORVU3Hr1G087130.1	Barley	plasma membrane, plastid	61.48	57.99
HORVU0Hr1G007130.1	Barley	plasma membrane, plastid	61.48	57.99
HORVU3Hr1G007180.1	Barley	cytosol, peroxisome, plasma membrane	54.2	57.93
Zm00001d011006_P001	Maize	cytosol, peroxisome, vacuole	57.7	57.87
Os01t0836600-01	Rice	plasma membrane	60.64	57.81
EES17614	Sorghum	cytosol, peroxisome, vacuole	57.28	57.61
TraesCS3B01G387500.1	Wheat	plastid	61.06	57.6
TraesCS1A01G049600.2	Wheat	cytosol, peroxisome, plasma membrane	56.44	57.57
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	60.92	57.54
TraesCS3A01G354500.1	Wheat	plasma membrane, plastid	60.92	57.54
Zm00001d042953_P001	Maize	plasma membrane	60.92	57.16
Zm00001d035553_P001	Maize	plasma membrane	57.0	57.0
Os03t0281900-01	Rice	cytosol, plasma membrane	62.32	56.54
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	53.36	56.44
TraesCS3A01G036400.1	Wheat	cytosol, peroxisome, vacuole	53.08	56.15
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	64.71	54.93
HORVU1Hr1G009920.2	Barley	plasma membrane, plastid	57.0	51.58
GSMUA_Achr6P33280_001	Banana	cytosol, peroxisome, plasma membrane	63.31	50.28
HORVU4Hr1G058070.2	Barley	cytosol	51.54	45.15
HORVU4Hr1G058160.2	Barley	cytosol, peroxisome	40.62	44.21
HORVU5Hr1G021110.1	Barley	cytosol	25.63	42.66
CDX76122	Canola	plasma membrane	67.23	37.44
Bra014776.1-P	Field mustard	cytosol	67.23	37.38
CDY02906	Canola	plasma membrane	67.09	37.28
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	31.09	35.75
Os03t0282100-00	Rice	cytosol, nucleus, plastid	38.1	35.51
Solyc09g098410.1.1	Tomato	nucleus	35.29	34.57
Solyc07g053300.1.1	Tomato	cytosol	28.99	34.05
Solyc01g097430.2.1	Tomato	cytosol, nucleus	39.36	33.53
GSMUA_Achr6P08820_001	Banana	plasma membrane	57.0	32.93
Solyc03g007690.1.1	Tomato	plastid	27.45	32.83
Solyc11g018690.1.1	Tomato	cytosol	15.69	32.75
Solyc05g056470.1.1	Tomato	cytosol, peroxisome, plasma membrane	28.15	32.74
Solyc03g113690.1.1	Tomato	plastid	28.99	31.46
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	24.23	28.22
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	24.79	28.1
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	24.23	27.55
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	25.21	26.67
Solyc08g005580.2.1	Tomato	cytosol, peroxisome, plasma membrane	24.09	26.26
Solyc08g075430.2.1	Tomato	cytosol, peroxisome, plasma membrane	23.53	26.01
Solyc01g006720.2.1	Tomato	plastid	25.63	25.28
Solyc05g008350.2.1	Tomato	nucleus, plastid	24.23	24.37
Solyc04g070970.2.1	Tomato	cytosol, peroxisome, plasma membrane	23.95	23.68
Solyc07g065780.1.1	Tomato	mitochondrion	14.29	22.92
Solyc11g018680.1.1	Tomato	golgi, mitochondrion, plasma membrane, plastid	8.96	22.07

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
UniProt:K4BPH5	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF428	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g010210.1	EnsemblPlants:Solyc04g010210.1.1
TMHMM:TMhelix	UniParc:UPI0002765E12	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:3525914..3528058

Molecular Weight (calculated)

80012.1 Da

IEP (calculated)

9.109

GRAVY (calculated)

0.131

Length

714 amino acids

Sequence
(BLAST)

001: MSKIVAQNVS PLRDCVPLYD RRQTVEMSSP TFAQLLNNVG DHVAGGETET PVHRVLTMQP PNSIPFVLSF SNLTYSVTVR RKNIFPAMSR GLTEEAPVTR
101: TKVLLHDISG EARDGELLAV LGASGSGKST LIDALANRIA KESLKGEMKL NGEKLHTKLL KVISAYVMQD DLLYPMLTVE ETLMFSAEFR LPRTLSKSKK
201: KSRVQALIDQ LGLRNAAKTI IGDEGHRGVS GGERRRVSIG IDIIHDPIIL FLDEPTSGLD STSAFMVVKV LQRIAQSGSI VIMSIHQPSN RILSLLDRLI
301: FLSHGQTVYS DSPFNLPQFF TDFGHPIPEN ENRTEFALDL IRELDGTPDG TNNLVEFNRK WKSCSTTSTI YDLSLKEAIS ASISRGKLVS GATNPTSMVP
401: TFANPIWTEM AVLSKRSFTN SWRMPEIFFV RFSAVMVTGF ILSTIFWRLD NSPKGIWERL GFIAFAVSTT YYICAEALPV FIHERYIFMR ETAYNAYRRS
501: SYCLSHALVS LPSLIILSLS FAALTFWAVG LDGGASGFLF YFSVVLASIW AGNSFVTFLS SVVPHVMIGY TIVVALLGYF LLFSGFYMNR DRIPSYWIWF
601: HYLSLVKYPY EAVLLNEFKD PTKCFVRGVQ LFDNSQLGDL PNSIKEKLLD NISETLNVTI TSSTCFTSGA DILVQQGITQ LNKWICLWVT IAWGFSYRIL
701: FYFTLLLGSK NKRR

Best Arabidopsis Sequence Match ( AT2G39350.1 )
(BLAST)

001: MARIVAANDD DSMELNTISS IHDSTLGQLL KNVSDVRKMA IGDETPVHES LNQDYNDGYM RTVPFVLSFD NLTYNVSVRP KLDFRNLFPR RRTEDPEIAQ
101: TARPKTKTLL NNISGETRDG EIMAVLGASG SGKSTLIDAL ANRIAKGSLK GTVKLNGETL QSRMLKVISA YVMQDDLLFP MLTVEETLMF AAEFRLPRSL
201: PKSKKKLRVQ ALIDQLGIRN AAKTIIGDEG HRGISGGERR RVSIGIDIIH DPILLFLDEP TSGLDSTSAF MVVKVLKRIA QSGSIVIMSI HQPSHRVLGL
301: LDRLIFLSRG HTVYSGSPAS LPRFFTEFGS PIPENENRTE FALDLIRELE GSAGGTRGLI EFNKKWQEMK KQSNRQPPLT PPSSPYPNLT LKEAIAASIS
401: RGKLVSGGES VAHGGATTNT TTLAVPAFAN PMWIEIKTLS KRSMLNSRRQ PELFGIRIAS VVITGFILAT VFWRLDNSPK GVQERLGFFA FAMSTMFYTC
501: ADALPVFLQE RYIFMRETAY NAYRRSSYVL SHAIVSFPSL IFLSVAFAAT TYWAVGLDGG LTGLLFYCLI ILASFWSGSS FVTFLSGVVP SVMLGYTIVV
601: AILAYFLLFS GFFINRNRIP DYWIWFHYMS LVKYPYEAVL QNEFSDATKC FVRGVQIFDN TPLGELPEVM KLKLLGTVSK SLGVTISSTT CLTTGSDILR
701: QQGVVQLSKW NCLFITVAFG FFFRILFYFT LLLGSKNKRR

Arabidopsis Description

ABCG1ABC transporter G family member 1 [Source:UniProtKB/Swiss-Prot;Acc:O80946]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.