Factsheet for PGSC0003DMT400029838

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g010210.1.1	Tomato	extracellular	91.65	89.22
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	88.92	85.36
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	77.7	74.59
Bra005051.1-P	Field mustard	plastid	65.04	73.62
CDX74853	Canola	plastid	65.04	73.26
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	76.4	71.08
KRG92984	Soybean	cytosol, peroxisome, plasma membrane	75.11	69.6
Bra008817.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	71.22	68.18
CDX69629	Canola	plastid	71.37	68.13
AT5G13580.1	Thale cress	cytosol, peroxisome, plasma membrane	71.22	68.09
AT2G39350.1	Thale cress	cytosol	71.51	67.16
AT3G55090.1	Thale cress	cytosol, peroxisome, plasma membrane	70.65	66.71
Bra005048.1-P	Field mustard	cytosol, nucleus, plasma membrane	70.65	65.99
CDY09810	Canola	plastid	71.37	65.96
PGSC0003DMT400061466	Potato	plasma membrane	68.06	63.83
GSMUA_Achr8P02140_001	Banana	cytosol, peroxisome, plasma membrane	63.45	62.46
GSMUA_Achr5P28450_001	Banana	plasma membrane	62.01	61.75
Os05t0120200-01	Rice	plasma membrane	61.3	60.94
HORVU5Hr1G021120.1	Barley	cytosol, peroxisome, plasma membrane	58.27	59.47
Zm00001d012438_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	63.17	59.08
Os05t0120000-00	Rice	plasma membrane	57.55	58.82
TraesCS5B01G087400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	57.41	58.59
EES18923	Sorghum	cytosol, peroxisome, plasma membrane	60.14	58.54
TraesCS5D01G093600.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	57.27	58.44
HORVU0Hr1G007130.1	Barley	plasma membrane, plastid	63.6	58.39
HORVU3Hr1G087130.1	Barley	plasma membrane, plastid	63.6	58.39
EES01718	Sorghum	cytosol, peroxisome, plasma membrane, plastid	62.45	58.26
TraesCS1D01G052000.1	Wheat	cytosol, peroxisome, plasma membrane	57.99	58.24
Zm00001d028689_P001	Maize	cytosol, peroxisome, plasma membrane	66.19	58.23
TraesCS1B01G066000.1	Wheat	cytosol, peroxisome, plasma membrane	58.13	58.21
TraesCS5A01G078500.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	56.98	58.15
TraesCS3B01G387500.1	Wheat	plastid	63.31	58.12
TraesCS3D01G348400.1	Wheat	plasma membrane, plastid	63.17	58.07
TraesCS3A01G354500.1	Wheat	plasma membrane, plastid	63.17	58.07
EER95064	Sorghum	cytosol, peroxisome, plasma membrane	66.47	58.04
EES17614	Sorghum	cytosol, peroxisome, vacuole	59.14	57.89
Zm00001d011006_P001	Maize	cytosol, peroxisome, vacuole	59.28	57.87
Zm00001d035553_P001	Maize	plasma membrane	59.28	57.7
HORVU3Hr1G007180.1	Barley	cytosol, peroxisome, plasma membrane	55.4	57.63
Os01t0836600-01	Rice	plasma membrane	62.01	57.54
Zm00001d042953_P001	Maize	plasma membrane	62.88	57.42
TraesCS1A01G049600.2	Wheat	cytosol, peroxisome, plasma membrane	57.7	57.29
TraesCS4B01G200600.1	Wheat	cytosol, peroxisome, plasma membrane	65.18	57.2
TraesCS4A01G103400.1	Wheat	cytosol, peroxisome, plasma membrane	65.32	57.04
TraesCS3B01G047600.1	Wheat	cytosol, peroxisome, vacuole	54.39	56.0
TraesCS3A01G036400.1	Wheat	cytosol, peroxisome, vacuole	54.24	55.85
Os03t0281900-01	Rice	cytosol, plasma membrane	62.59	55.27
TraesCS4D01G201700.1	Wheat	mitochondrion, plasma membrane, plastid	64.89	53.63
HORVU1Hr1G009920.2	Barley	plasma membrane, plastid	58.13	51.2
GSMUA_Achr6P33280_001	Banana	cytosol, peroxisome, plasma membrane	63.45	49.05
HORVU4Hr1G058070.2	Barley	cytosol	51.37	43.8
HORVU4Hr1G058160.2	Barley	cytosol, peroxisome	41.15	43.6
HORVU5Hr1G021110.1	Barley	cytosol	26.33	42.66
CDX76122	Canola	plasma membrane	68.49	37.13
CDY02906	Canola	plasma membrane	68.63	37.12
Bra014776.1-P	Field mustard	cytosol	68.49	37.07
PGSC0003DMT400032370	Potato	plasma membrane	32.09	35.97
Os03t0282100-00	Rice	cytosol, nucleus, plastid	38.85	35.25
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	30.36	34.7
PGSC0003DMT400084876	Potato	cytosol	35.68	34.02
PGSC0003DMT400050007	Potato	cytosol	40.14	33.53
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	28.2	32.89
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	29.64	32.14
GSMUA_Achr6P08820_001	Banana	plasma membrane	57.12	32.12
PGSC0003DMT400062852	Potato	plastid	30.07	31.62
PGSC0003DMT400039671	Potato	plasma membrane	23.31	29.14
PGSC0003DMT400039676	Potato	plasma membrane	25.61	28.3
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	24.75	28.06
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	24.17	27.86
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	24.89	25.63
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	23.74	25.54
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	24.32	25.53
PGSC0003DMT400054994	Potato	plastid	26.04	24.93
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	24.03	23.1
PGSC0003DMT400002062	Potato	cytosol	24.75	22.63

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1ATG3
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400011469	PGSC:PGSC0003DMG400011469	EnsemblPlants:PGSC0003DMT400029838
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF428	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000295D50F	SEG:seg	:	:	:

Description

Stigma/style ABC transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400011469]

Coordinates

chr4:-:6566287..6568374

Molecular Weight (calculated)

77896.6 Da

IEP (calculated)

9.216

GRAVY (calculated)

0.148

Length

695 amino acids

Sequence
(BLAST)

001: MSLPTFAQLL NNMGDVTGDE TETPVHQVLT MQPQNSIPFL LSFSNLTYSV RVRRKVAFPA IYGGRAEEAP VTRTKVLLHD ISGEARDGEL LAVLGASGSG
101: KSTLIDALAN RIAKESLKGE VKLNGEKLHT KLLKVISAYV MQDDLLYPML TVEETLMFSA QFRLPRTLSK SKKKGRVQAL IDQLGLRNAA KTIIGDEGHR
201: GVSGGERRRV SIGIDIIHDP IILFLDEPTS GLDSTSAFMV VKVLQRIAQS GSIVIMSIHQ PSNRILGLLD RLIFLSHGQT VYSDSPLNLP QFFADFGHPI
301: PENENRTEFA LDLIRELEDS PDGTNNLVEF NRKWKNTNRN SATTPARYDL SLKEAISASI SRGKLVSGAT NNAANPTVMV PTFANPIWTE IAVLSKRSFT
401: NSWRMPEIFF VRFSAVMVTG FILATIFWRL DNSPKGIWER LGFIAFAVST TYYICTEALP VFIQERYIFM RETAYNAYRR SSYCISHALV SLPGLIFLSL
501: LFVALTFWAV GLDGGASGFL FYFCVFLASI WAGNSFVTFL SGVVPHVMIG YIIVVALLGY FLLFSGFYMN RDRIPSYWIW FHYLSLVKYP YEAVLLNEFK
601: DPTKCFVRGV QLFDNSQLGD LPNSIKEKLL ENISETLNVT ITSSTCLTSG ADILVQQGIT QLNKWNCLWV TIAWGFFFRI LFYFSLLLGS KNKRR

Best Arabidopsis Sequence Match ( AT2G39350.1 )
(BLAST)

001: MARIVAANDD DSMELNTISS IHDSTLGQLL KNVSDVRKMA IGDETPVHES LNQDYNDGYM RTVPFVLSFD NLTYNVSVRP KLDFRNLFPR RRTEDPEIAQ
101: TARPKTKTLL NNISGETRDG EIMAVLGASG SGKSTLIDAL ANRIAKGSLK GTVKLNGETL QSRMLKVISA YVMQDDLLFP MLTVEETLMF AAEFRLPRSL
201: PKSKKKLRVQ ALIDQLGIRN AAKTIIGDEG HRGISGGERR RVSIGIDIIH DPILLFLDEP TSGLDSTSAF MVVKVLKRIA QSGSIVIMSI HQPSHRVLGL
301: LDRLIFLSRG HTVYSGSPAS LPRFFTEFGS PIPENENRTE FALDLIRELE GSAGGTRGLI EFNKKWQEMK KQSNRQPPLT PPSSPYPNLT LKEAIAASIS
401: RGKLVSGGES VAHGGATTNT TTLAVPAFAN PMWIEIKTLS KRSMLNSRRQ PELFGIRIAS VVITGFILAT VFWRLDNSPK GVQERLGFFA FAMSTMFYTC
501: ADALPVFLQE RYIFMRETAY NAYRRSSYVL SHAIVSFPSL IFLSVAFAAT TYWAVGLDGG LTGLLFYCLI ILASFWSGSS FVTFLSGVVP SVMLGYTIVV
601: AILAYFLLFS GFFINRNRIP DYWIWFHYMS LVKYPYEAVL QNEFSDATKC FVRGVQIFDN TPLGELPEVM KLKLLGTVSK SLGVTISSTT CLTTGSDILR
701: QQGVVQLSKW NCLFITVAFG FFFRILFYFT LLLGSKNKRR

Arabidopsis Description

ABCG1ABC transporter G family member 1 [Source:UniProtKB/Swiss-Prot;Acc:O80946]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.