Factsheet for PGSC0003DMT400019318

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	95.7	95.7
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	70.67	70.56
CDY46506	Canola	cytosol, peroxisome, plasma membrane	66.52	67.22
Bra026514.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.22	66.92
CDY51602	Canola	plastid	65.93	66.82
AT3G25620.2	Thale cress	cytosol, nucleus, plasma membrane, plastid	66.52	66.82
CDY48079	Canola	plastid	64.59	65.56
CDX99764	Canola	cytosol, peroxisome, plasma membrane	66.52	65.55
KRH34780	Soybean	cytosol, peroxisome, plasma membrane	65.93	65.06
KRH75541	Soybean	cytosol, peroxisome, plasma membrane, plastid	64.89	64.6
KRG92003	Soybean	cytosol	64.89	64.22
KRH37571	Soybean	cytosol, peroxisome, plasma membrane, plastid	58.22	63.08
KRH71117	Soybean	cytosol, peroxisome, plasma membrane, plastid	63.11	62.28
Bra025152.1-P	Field mustard	plastid	43.26	58.99
PGSC0003DMT400039671	Potato	plasma membrane	47.85	58.09
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	55.56	58.05
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	55.41	56.5
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	50.52	55.63
PGSC0003DMT400039676	Potato	plasma membrane	49.93	53.58
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	43.85	49.09
PGSC0003DMT400054994	Potato	plastid	42.96	39.94
PGSC0003DMT400002062	Potato	cytosol	44.3	39.34
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	25.04	27.8
PGSC0003DMT400032370	Potato	plasma membrane	25.19	27.42
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	23.7	26.85
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	24.89	26.21
PGSC0003DMT400062852	Potato	plastid	25.63	26.17
PGSC0003DMT400029838	Potato	extracellular	25.63	24.89
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	26.37	24.62
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	26.07	24.31
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	26.07	24.31
PGSC0003DMT400061466	Potato	plasma membrane	26.67	24.29
PGSC0003DMT400084876	Potato	cytosol	25.63	23.73
PGSC0003DMT400050007	Potato	cytosol	25.48	20.67

Protein Annotations

EntrezGene:102586259	MapMan:11.4.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1ABW8	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400007465
PGSC:PGSC0003DMG400007465	EnsemblPlants:PGSC0003DMT400019318	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF303
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002961BAD	RefSeq:XP_006366061.1	SEG:seg

Description

White-brown-complex ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400007465]

Coordinates

chr4:-:640229..644516

Molecular Weight (calculated)

76620.6 Da

IEP (calculated)

9.271

GRAVY (calculated)

0.031

Length

675 amino acids

Sequence
(BLAST)

001: MLPHDQENSS NIHGGSSNVL VRARIDSISL QIEPNGPTCN VSPRVNDDRV SDHQQSHHAK LSILRESLHP VTLKFEDVSY TIKLESNKRG YFSSHQQKQT
101: RMILQNVMGI VKPGELLAML GPSGSGKTTL LTSIAGRLHG KFSGTITYND QQFSSSMKRK IGFVTQDDVL YPHLTVLETL TYAALLRLPS KLTNQEKIEQ
201: AELVIMELGL TRCRNSMIGG QLFRGISGGE RKRVSIGQEM LVNPSLLLLD EPTSGLDSTT AQRIMSTLRW LARGGRTVVT TIHQPSSTLF RMFDKIIVLT
301: EGCPIYYGKS SLVMEYFASI GYAPGFNFMN PADFLLDLAN GITHDTRHDD QHELIMKQDQ SENQNATKQS LISSYRKNIY PLLKEEINQS CNRPIRSSST
401: SRDDQWTTSW WLQFKVLLGR GLKERKHEAY SGLRIFQVMS VSFLSGLLWW HCKTNHIMDQ VGLLFFFSIF WGFFPLFSAI FAFPQERPML IRERSSGMYR
501: LSSYYFARTV GDLPMELVLP TIFVTVTYWM GGLKPKFVTF ILTLLIILLN VLVSQGLGLA LGAILMDVKQ ATTLSSVLML VFLLASGYYI QHIPIFINWL
601: KYISFSHYCY KLLLGVQYSR NEVYECGIGK YCEVLEFPPI KYLGIDNLVL DVVALVVMLV VYRLLAYVAL RLWHQ

Best Arabidopsis Sequence Match ( AT3G25620.2 )
(BLAST)

001: MMPPNEQESS FPKTPSANRH ETSPVQENRF SSPSHVNPCL DDDNDHDGPS HQSRQSSVLR QSLRPIILKF EELTYSIKSQ TGKGSYWFGS QEPKPNRLVL
101: KCVSGIVKPG ELLAMLGPSG SGKTTLVTAL AGRLQGKLSG TVSYNGEPFT SSVKRKTGFV TQDDVLYPHL TVMETLTYTA LLRLPKELTR KEKLEQVEMV
201: VSDLGLTRCC NSVIGGGLIR GISGGERKRV SIGQEMLVNP SLLLLDEPTS GLDSTTAARI VATLRSLARG GRTVVTTIHQ PSSRLYRMFD KVLVLSEGCP
301: IYSGDSGRVM EYFGSIGYQP GSSFVNPADF VLDLANGITS DTKQYDQIET NGRLDRLEEQ NSVKQSLISS YKKNLYPPLK EEVSRTFPQD QTNARLRKKA
401: ITNRWPTSWW MQFSVLLKRG LKERSHESFS GLRIFMVMSV SLLSGLLWWH SRVAHLQDQV GLLFFFSIFW GFFPLFNAIF TFPQERPMLI KERSSGIYRL
501: SSYYIARTVG DLPMELILPT IFVTITYWMG GLKPSLTTFI MTLMIVLYNV LVAQGVGLAL GAILMDAKKA ATLSSVLMLV FLLAGGYYIQ HIPGFIAWLK
601: YVSFSHYCYK LLVGVQYTWD EVYECGSGLH CSVMDYEGIK NLRIGNMMWD VLALAVMLLL YRVLAYLALR NL

Arabidopsis Description

ABCG21ABC transporter G family member 21 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA72]
SUBAcon: [cytosol,nucleus,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.