Factsheet for PGSC0003DMT400049667

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	94.45	94.45
PGSC0003DMT400039671	Potato	plasma membrane	67.21	74.1
PGSC0003DMT400039676	Potato	plasma membrane	70.8	69.0
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.66	68.54
KRH22136	Soybean	cytosol, peroxisome, plasma membrane	63.3	61.88
KRH55354	Soybean	cytosol, peroxisome, plasma membrane	60.52	59.46
AT4G27420.1	Thale cress	cytosol, peroxisome, plasma membrane	61.83	59.4
Bra019051.1-P	Field mustard	plasma membrane	61.66	59.34
CDX92829	Canola	plasma membrane	62.32	59.32
CDY29304	Canola	cytosol, peroxisome, plasma membrane	61.34	58.93
CDY29837	Canola	plasma membrane	61.83	58.85
Bra026352.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.17	58.78
CDX89252	Canola	cytosol, peroxisome, plasma membrane	61.17	58.78
GSMUA_Achr1P08870_001	Banana	cytosol, peroxisome, plasma membrane	57.91	57.72
GSMUA_Achr2P02720_001	Banana	mitochondrion	54.81	56.47
PGSC0003DMT400004973	Potato	cytosol, peroxisome, plasma membrane	55.3	52.48
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	55.63	50.52
PGSC0003DMT400047547	Potato	cytosol, peroxisome, plasma membrane	53.51	49.55
PGSC0003DMT400002293	Potato	cytosol, peroxisome, plasma membrane	48.45	49.25
PGSC0003DMT400054994	Potato	plastid	47.31	39.94
PGSC0003DMT400002062	Potato	cytosol	46.17	37.24
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	27.08	27.3
PGSC0003DMT400032370	Potato	plasma membrane	27.57	27.26
PGSC0003DMT400059944	Potato	cytosol, peroxisome, plasma membrane	27.24	26.05
PGSC0003DMT400053843	Potato	cytosol, plasma membrane, plastid	24.96	25.67
PGSC0003DMT400062852	Potato	plastid	26.92	24.96
PGSC0003DMT400060438	Potato	cytosol, peroxisome, plasma membrane, plastid	29.36	24.86
PGSC0003DMT400029838	Potato	extracellular	28.06	24.75
PGSC0003DMT400029881	Potato	cytosol, peroxisome, plasma membrane	28.87	24.45
PGSC0003DMT400061466	Potato	plasma membrane	28.87	23.89
PGSC0003DMT400078356	Potato	extracellular, plasma membrane, vacuole	26.75	22.68
PGSC0003DMT400084876	Potato	cytosol	26.26	22.09
PGSC0003DMT400050007	Potato	cytosol	27.57	20.31

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1BP51
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400019295	PGSC:PGSC0003DMG400019295	EnsemblPlants:PGSC0003DMT400049667
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF257	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0002956A08	SEG:seg	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400019295]

Coordinates

chr7:+:53551623..53555032

Molecular Weight (calculated)

68488.0 Da

IEP (calculated)

8.692

GRAVY (calculated)

0.168

Length

613 amino acids

Sequence
(BLAST)

001: MEDIQITQLE SAAIFKKTNF PVTLKFENVV YKIKPKTEGM FNNSSKSQEE KIILRGITGI VFPGEMLAML GPSGSGKTTL LTGLGGRLSG RLEGTITYNG
101: MPFKNAMKRY TGFVTQDDVL YPHLTVTETL VYTALLRLPK TLSHMEKVAH AEAVISQLGL TKCKDSIIGG PLLRGISGGE RKRVSIGQEM LINPSLLFLD
201: EPTSGLDSTT AQKIVSTLWE LVNGGRTIVM TIHQPSSRLF YMFHKVLLLS EGNPLYFGRG EDVMAYFSSI GFSPSVAMNP SDFLLDLANG VIDDPQEDQA
301: SIKQTLVTAF KTNLLDGVKE ELQKYDDSED HEKLQKGKLD RWSNTWWNES VVLFRRGMKE RKHDSFSFLK VGQVLIVSIL CAMLWWRSSD IQDQSGLMFF
401: ITSFWGFYPL FQAIFTFPPE RMMLEKERSS GMYRLSSYFM SRIVGDLPME LVLPTVFVII TYWTTGLKQS PVNFFSTLFT VLYGVLVAQG LGLAIGAMIM
501: DLKSATVLAS VIMLSFTLVS GFFVQHVPSF ISWLKYISLS QYTFKLLIGS QYEADEMYHC GIVDATCYVH DFPAIKSVGL GGKAISVVAL TIMLVGYRLL
601: AYLVLTRIGV TKK

Best Arabidopsis Sequence Match ( AT4G27420.1 )
(BLAST)

001: MDNQEVSMDV ETPIAKTNDD RSLPFSIFKK ANNPVTLKFE NLVYTVKLKD SQGCFGKNDK TEERTILKGL TGIVKPGEIL AMLGPSGSGK TSLLTALGGR
101: VGEGKGKLTG NISYNNKPLS KAVKRTTGFV TQDDALYPNL TVTETLVFTA LLRLPNSFKK QEKIKQAKAV MTELGLDRCK DTIIGGPFLR GVSGGERKRV
201: SIGQEILINP SLLFLDEPTS GLDSTTAQRI VSILWELARG GRTVVTTIHQ PSSRLFYMFD KLLLLSEGNP VYFGLGSNAM DYFASVGYSP LVERINPSDF
301: LLDIANGVGS DESQRPEAMK AALVAFYKTN LLDSVINEVK GQDDLCNKPR ESSRVATNTY GDWPTTWWQQ FCVLLKRGLK QRRHDSFSGM KVAQIFIVSF
401: LCGLLWWQTK ISRLQDQIGL LFFISSFWAF FPLFQQIFTF PQERAMLQKE RSSGMYRLSP YFLSRVVGDL PMELILPTCF LVITYWMAGL NHNLANFFVT
501: LLVLLVHVLV SGGLGLALGA LVMDQKSATT LGSVIMLTFL LAGGYYVQHV PVFISWIKYV SIGYYTYKLL ILGQYTANEL YPCGDNGKLR CHVGDFEGIK
601: HIGFNSGLVS ALALTAMLVV YRVIAYIALT RIGKTKSG

Arabidopsis Description

ABCG9ABCG9 [Source:UniProtKB/TrEMBL;Acc:A0A178V178]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.