Factsheet for VIT_19s0014g03280.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039671	Potato	plasma membrane	63.56	71.22
PGSC0003DMT400049667	Potato	cytosol, peroxisome, plasma membrane	68.54	69.66
KRH22136	Soybean	cytosol, peroxisome, plasma membrane	69.5	69.06
Solyc07g063400.2.1	Tomato	cytosol, peroxisome, plasma membrane	66.93	68.03
Solyc12g013630.1.1	Tomato	cytosol, peroxisome, plasma membrane	68.54	67.99
PGSC0003DMT400039676	Potato	plasma membrane	66.29	65.66
Solyc12g013640.1.1	Tomato	cytosol, peroxisome, plasma membrane	65.97	65.24
Bra026352.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.13	64.58
CDX89252	Canola	cytosol, peroxisome, plasma membrane	66.13	64.58
CDY29304	Canola	cytosol, peroxisome, plasma membrane	66.13	64.58
Bra019051.1-P	Field mustard	plasma membrane	65.65	64.21
KRH55354	Soybean	cytosol, peroxisome, plasma membrane	64.21	64.1
CDY29837	Canola	plasma membrane	65.81	63.66
CDX92829	Canola	plasma membrane	65.65	63.51
AT4G27420.1	Thale cress	cytosol, peroxisome, plasma membrane	63.88	62.38
GSMUA_Achr1P08870_001	Banana	cytosol, peroxisome, plasma membrane	59.87	60.65
GSMUA_Achr2P02720_001	Banana	mitochondrion	54.9	57.48
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	57.62	54.64
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	57.14	52.66
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	50.24	47.14
VIT_08s0032g00790.t01	Wine grape	plastid	49.76	41.44
VIT_19s0015g00960.t01	Wine grape	peroxisome	43.5	39.5
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.99	38.53
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.93	27.75
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	26.97	27.41
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	25.36	26.64
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.81	26.3
VIT_17s0000g02200.t01	Wine grape	cytosol	28.73	25.39
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	29.86	25.27
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	29.86	24.9
VIT_16s0050g01620.t01	Wine grape	cytosol	23.6	24.62
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	27.13	23.18

Protein Annotations

EntrezGene:100265848	wikigene:100265848	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM484265	ProteinID:CAN62144	ProteinID:CAN62144.1	ProteinID:CCB46370
ProteinID:CCB46370.1	UniProt:F6H274	EMBL:FN595229	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100265848	wikigene:LOC100265848	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF257
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00019856F6	ArrayExpress:VIT_19s0014g03280	EnsemblPlantsGene:VIT_19s0014g03280
EnsemblPlants:VIT_19s0014g03280.t01	RefSeq:XP_002281949	RefSeq:XP_002281949.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:3404282..3407783

Molecular Weight (calculated)

68998.5 Da

IEP (calculated)

9.313

GRAVY (calculated)

0.102

Length

623 amino acids

Sequence
(BLAST)

001: MVDIKAQPES ITANPEPPPI FTKAKNSGHV ILKFEEVDYK AKTHKGGLLR KDSKPEEKHI LKGITGIVLP GEMLAMLGPS GSGKTTLLTA LGGRLGGRLN
101: GSITYNGKPF SNRMKRSTGF VTQDDVLYPH LTVTETLVFT ALLRLPNTIS KEDKVRHAEA VITQLGLTKC KDSIIGNPFL RGVSGGERKR VSIGQEMLIN
201: PSLLFLDEPT SGLDSTTAQR IVSTLWELAK GGRTVVMTIH QPSSRLFYMF HKVLLLSEGN PLYFGKGAEA MDYFSSIGFA PSVAMNPSDF LLDLANGVLS
301: DDIHEDPTTI KQTLVLSYRS KIDEGLKAEL REIDNHLQDG LEDKQLDRWA TTWWQQCSVL FRRGVKERRH ESFSGLKIGQ VLVVGFLSGL LWWQSDSSHL
401: QDQIGLLFFC SGFWGFFPLF QAIFTFPQER MMLEKERSSG MYRLSSYFMS RTIGDLPMEL VLPTIFVIIT YWMAGLKPNA INFLHTLFAL LFSVLVSQSL
501: GLALGAAVMD QKSATILGSV IMLSFLLAGG YYVQNVPHFI AWIKYVSISH YTYKLLLGSQ YKPGDIYPCS AKTTCLVGDF PAVQLVGLDK QILAAVALAI
601: MLVGYRLIAY IALMRIGVPG KNS

Best Arabidopsis Sequence Match ( AT4G27420.1 )
(BLAST)

001: MDNQEVSMDV ETPIAKTNDD RSLPFSIFKK ANNPVTLKFE NLVYTVKLKD SQGCFGKNDK TEERTILKGL TGIVKPGEIL AMLGPSGSGK TSLLTALGGR
101: VGEGKGKLTG NISYNNKPLS KAVKRTTGFV TQDDALYPNL TVTETLVFTA LLRLPNSFKK QEKIKQAKAV MTELGLDRCK DTIIGGPFLR GVSGGERKRV
201: SIGQEILINP SLLFLDEPTS GLDSTTAQRI VSILWELARG GRTVVTTIHQ PSSRLFYMFD KLLLLSEGNP VYFGLGSNAM DYFASVGYSP LVERINPSDF
301: LLDIANGVGS DESQRPEAMK AALVAFYKTN LLDSVINEVK GQDDLCNKPR ESSRVATNTY GDWPTTWWQQ FCVLLKRGLK QRRHDSFSGM KVAQIFIVSF
401: LCGLLWWQTK ISRLQDQIGL LFFISSFWAF FPLFQQIFTF PQERAMLQKE RSSGMYRLSP YFLSRVVGDL PMELILPTCF LVITYWMAGL NHNLANFFVT
501: LLVLLVHVLV SGGLGLALGA LVMDQKSATT LGSVIMLTFL LAGGYYVQHV PVFISWIKYV SIGYYTYKLL ILGQYTANEL YPCGDNGKLR CHVGDFEGIK
601: HIGFNSGLVS ALALTAMLVV YRVIAYIALT RIGKTKSG

Arabidopsis Description

ABCG9ABCG9 [Source:UniProtKB/TrEMBL;Acc:A0A178V178]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.