Factsheet for VIT_19s0014g01540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	67.21	69.48
KRH27319	Soybean	cytosol, mitochondrion, plasma membrane	69.0	69.34
KRH21994	Soybean	cytosol, peroxisome, plasma membrane	68.52	68.74
Solyc07g062630.1.1	Tomato	cytosol, peroxisome, plasma membrane	68.52	67.63
PGSC0003DMT400032370	Potato	plasma membrane	68.19	67.42
CDY59400	Canola	cytosol, plasma membrane, plastid	63.62	66.33
CDY02516	Canola	cytosol, peroxisome, plasma membrane	63.46	66.16
Bra030948.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.46	66.16
AT1G53270.1	Thale cress	plasma membrane	62.97	65.42
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	40.62	60.14
Zm00001d011350_P001	Maize	cytosol, peroxisome, plasma membrane	47.96	57.99
Os01t0615500-00	Rice	plastid	57.59	57.59
TraesCS3B01G251300.1	Wheat	plastid	56.28	57.02
TraesCS3D01G231500.1	Wheat	mitochondrion, plastid	56.28	57.02
HORVU3Hr1G054160.1	Barley	plastid	56.44	56.91
TraesCS3A01G221400.1	Wheat	plastid	56.12	56.86
Zm00001d044476_P001	Maize	cytosol, peroxisome, plasma membrane	55.79	56.16
EES03276	Sorghum	mitochondrion	55.95	56.05
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.47	45.83
VIT_16s0050g01620.t01	Wine grape	cytosol	42.09	43.22
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	43.88	42.9
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.73	29.76
VIT_17s0000g02200.t01	Wine grape	cytosol	33.44	29.08
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.07	28.78
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.41	26.97
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	28.39	26.48
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	28.71	26.04
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.41	25.3
VIT_08s0032g00790.t01	Wine grape	plastid	29.36	24.06
VIT_19s0015g00960.t01	Wine grape	peroxisome	26.1	23.32
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	28.06	22.16
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	25.45	21.4

Protein Annotations

EntrezGene:100243490	wikigene:100243490	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM423811	ProteinID:CAN66605	ProteinID:CAN66605.1	ProteinID:CCB46267
ProteinID:CCB46267.1	UniProt:F6H2P9	EMBL:FN595229	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100243490	wikigene:LOC100243490	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF441
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00015C7491	ArrayExpress:VIT_19s0014g01540	EnsemblPlantsGene:VIT_19s0014g01540
EnsemblPlants:VIT_19s0014g01540.t01	RefSeq:XP_002285381	RefSeq:XP_002285381.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:-:1636708..1638686

Molecular Weight (calculated)

68045.4 Da

IEP (calculated)

8.418

GRAVY (calculated)

0.169

Length

613 amino acids

Sequence
(BLAST)

001: MELPVKSPAS RARKGSYRIE TRSLSYKLGS RYDEVKRVCC GWGSEEVPEL ILKGVSCEAR PGEITAIAGP SGAGKTTLLE VLAGRTCGRV CGQVLVNDQA
101: MDAGLFRRKS GYVTQDDALF PLLTVEETLM YSALLRLQGG RREAGSRVKE LMRELGLEHV AGSRIGGGGS NGGISGGERR RVSIGAELVH DPAVIFIDEP
201: TSGLDSASAL HLILLLKATM VGQGKTVVLT IHQPGFRILE LVDRLVLLSN GLVLHNGSLN LLEERLKFAG HCIPRHVNVL EFAIDIAENL AVQPSEAPNN
301: HLALDEKGSK EKKDACASLY REEKPPFYSN SRFEEVLILG QRFCSIIFRT KQLFAARIIQ ALVAGLVLGT VFINTNNDQG KMALQARIGF FAFTLTFLLS
401: STTEGLPIFL QERRILMRET SRGAYRVSSY VLSNTLIFLP FLLMVSLLYA TPVYWLVGLR RDMDGFLYFS LVVWLVVLMS NSFVACFSAL VPNFIMGTSV
501: ISGLMGSFFL FSGYFIAEKN IPSYWIFMHY LSLFKYPFEC FMINEYGGEE GKKRCVEKEG DQCGLFGDGF LRQQGLEEPQ KWSNLAVMLG FILGYRLLCF
601: FILLCRCCRS TRN

Best Arabidopsis Sequence Match ( AT1G53270.1 )
(BLAST)

001: MELPVKAPIP GGREISYRLE TKNLSYRIGG NTPKFSNLCG LLSEKEEKVI LKDVSCDARS AEITAIAGPS GAGKTTLLEI LAGKVSHGKV SGQVLVNGRP
101: MDGPEYRRVS GFVPQEDALF PFLTVQETLT YSALLRLKTK RKDAAAKVKR LIQELGLEHV ADSRIGQGSR SGISGGERRR VSIGVELVHD PNVILIDEPT
201: SGLDSASALQ VVTLLKDMTI KQGKTIVLTI HQPGFRILEQ IDRIVLLSNG MVVQNGSVYS LHQKIKFSGH QIPRRVNVLE YAIDIAGSLE PIRTQSCREI
301: SCYGHSKTWK SCYISAGGEL HQSDSHSNSV LEEVQILGQR SCKNIFRTKQ LFTTRALQAS IAGLILGSIY LNVGNQKKEA KVLRTGFFAF ILTFLLSSTT
401: EGLPIFLQDR RILMRETSRR AYRVLSYVLA DTLIFIPFLL IISMLFATPV YWLVGLRREL DGFLYFSLVI WIVLLMSNSF VACFSALVPN FIMGTSVISG
501: LMGSFFLFSG YFIAKDRIPV YWEFMHYLSL FKYPFECLMI NEYRGDVFLK QQDLKESQKW SNLGIMASFI VGYRVLGFFI LWYRCYRTRS

Arabidopsis Description

ABCG10ABCG10 [Source:UniProtKB/TrEMBL;Acc:A0A178WBC4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.