Factsheet for VIT_12s0028g02360.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	69.48	67.21
PGSC0003DMT400052674	Potato	cytosol, peroxisome, plasma membrane	64.25	62.66
Solyc07g053300.1.1	Tomato	cytosol	63.58	62.01
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	43.0	61.59
TraesCS3A01G221400.1	Wheat	plastid	55.99	54.88
TraesCS3B01G251300.1	Wheat	plastid	55.99	54.88
HORVU3Hr1G054160.1	Barley	plastid	56.16	54.77
TraesCS3D01G231500.1	Wheat	mitochondrion, plastid	55.82	54.71
Zm00001d011350_P001	Maize	cytosol, peroxisome, plasma membrane	46.54	54.44
Os01t0615500-00	Rice	plastid	55.14	53.34
EES03276	Sorghum	mitochondrion	54.64	52.94
Zm00001d044476_P001	Maize	cytosol, peroxisome, plasma membrane	54.13	52.71
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.75	46.46
VIT_16s0050g01620.t01	Wine grape	cytosol	44.35	44.05
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.53	43.06
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	34.91	28.12
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	34.74	27.58
VIT_17s0000g02200.t01	Wine grape	cytosol	31.7	26.67
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.64	25.36
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.99	25.27
VIT_01s0011g02730.t01	Wine grape	cytosol, peroxisome, plasma membrane	28.5	25.0
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.64	23.8
VIT_19s0015g00960.t01	Wine grape	peroxisome	26.64	23.03
VIT_08s0032g00790.t01	Wine grape	plastid	28.33	22.46
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	25.97	21.12
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.32	20.88

Protein Annotations

EntrezGene:100267668	wikigene:100267668	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM442540	ProteinID:CAN60804	ProteinID:CAN60804.1	ProteinID:CCB47356
ProteinID:CCB47356.1	UniProt:F6H4Y8	EMBL:FN595235	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100267668	wikigene:LOC100267668	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF441
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002108FF1	ArrayExpress:VIT_12s0028g02360	EnsemblPlantsGene:VIT_12s0028g02360
EnsemblPlants:VIT_12s0028g02360.t01	RefSeq:XP_002276422	RefSeq:XP_002276422.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:3103958..3105784

Molecular Weight (calculated)

66936.6 Da

IEP (calculated)

8.389

GRAVY (calculated)

0.093

Length

593 amino acids

Sequence
(BLAST)

001: MELPVKAPAG SCKVQYRIRT KELTYRLSRG YDELNCFGSW DEPNHVPRYI LKNVNCEARP GEITAIAGPS GAGKTTLLEI LAGVVRPSRV SGQILVNDQP
101: MDATCFRRVS GYVTQEDALF PLLTIEETLM YSARLRLRGG RDRAAARVKE LLKELELEHV AGARIGDESS RGISGGEKRR LSIGVDLVHD PTVLLIDEPT
201: SGLDSASAHH VVLLLKSMAT NQGKTIVLTI HQPGFRILDL FDQVVLLSNG TVLHHGPLHL LEHRLKIAGH CIPQHVNVLE FAIDVTESLV TDMEENKPVN
301: GEIEQGFGHI NELPNLSNVD ESRICYPNSH FEEVLLLGQR FSRNIFRTKQ LFTARTTQAV LAGFVLGTIF KNEANDPSKF KLHTQIGFFA FSLTFLLSST
401: TEGLPIFLQE RRILMRETSR GAYRVSSYVV ANTLIFLPFL LTVALLYTTP VYWLVGLRRE IDGFLYFSLV VWIIVLMSNS FIACFSALVP NFIIGTSLIA
501: GLMGSFFLFS GYFISKEDIP RYWIFMHYLS LFKYPFECFM INEYGGKKGK CLESQGLKES QKWSNLGVML GFIFGYRFLC FLILWYRSYR HRS

Best Arabidopsis Sequence Match ( AT1G53270.1 )
(BLAST)

001: MELPVKAPIP GGREISYRLE TKNLSYRIGG NTPKFSNLCG LLSEKEEKVI LKDVSCDARS AEITAIAGPS GAGKTTLLEI LAGKVSHGKV SGQVLVNGRP
101: MDGPEYRRVS GFVPQEDALF PFLTVQETLT YSALLRLKTK RKDAAAKVKR LIQELGLEHV ADSRIGQGSR SGISGGERRR VSIGVELVHD PNVILIDEPT
201: SGLDSASALQ VVTLLKDMTI KQGKTIVLTI HQPGFRILEQ IDRIVLLSNG MVVQNGSVYS LHQKIKFSGH QIPRRVNVLE YAIDIAGSLE PIRTQSCREI
301: SCYGHSKTWK SCYISAGGEL HQSDSHSNSV LEEVQILGQR SCKNIFRTKQ LFTTRALQAS IAGLILGSIY LNVGNQKKEA KVLRTGFFAF ILTFLLSSTT
401: EGLPIFLQDR RILMRETSRR AYRVLSYVLA DTLIFIPFLL IISMLFATPV YWLVGLRREL DGFLYFSLVI WIVLLMSNSF VACFSALVPN FIMGTSVISG
501: LMGSFFLFSG YFIAKDRIPV YWEFMHYLSL FKYPFECLMI NEYRGDVFLK QQDLKESQKW SNLGIMASFI VGYRVLGFFI LWYRCYRTRS

Arabidopsis Description

ABCG10ABCG10 [Source:UniProtKB/TrEMBL;Acc:A0A178WBC4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.