Factsheet for VIT_01s0011g02730.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g006960.2.1	Tomato	cytosol, nucleus, peroxisome	71.01	71.11
PGSC0003DMT400019318	Potato	cytosol, nucleus, peroxisome	70.56	70.67
KRG92003	Soybean	cytosol	70.27	69.65
KRH34780	Soybean	cytosol, peroxisome, plasma membrane	70.12	69.3
KRH75541	Soybean	cytosol, peroxisome, plasma membrane, plastid	69.38	69.17
AT3G25620.2	Thale cress	cytosol, nucleus, plasma membrane, plastid	68.64	69.05
CDY51602	Canola	plastid	67.6	68.62
CDY46506	Canola	cytosol, peroxisome, plasma membrane	67.6	68.41
KRH37571	Soybean	cytosol, peroxisome, plasma membrane, plastid	63.02	68.38
CDY48079	Canola	plastid	67.16	68.27
Bra026514.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.46	68.26
KRH71117	Soybean	cytosol, peroxisome, plasma membrane, plastid	67.6	66.81
CDX99764	Canola	cytosol, peroxisome, plasma membrane	67.16	66.28
Bra025152.1-P	Field mustard	plastid	45.56	62.22
VIT_02s0087g00840.t01	Wine grape	cytosol, peroxisome, plasma membrane	57.54	59.21
VIT_19s0014g03280.t01	Wine grape	cytosol, peroxisome, plasma membrane	52.66	57.14
VIT_18s0072g01220.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.04	47.89
VIT_08s0032g00790.t01	Wine grape	plastid	44.97	40.64
VIT_19s0015g00960.t01	Wine grape	peroxisome	40.09	39.5
VIT_18s0166g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	44.38	38.66
VIT_19s0014g01540.t01	Wine grape	cytosol, plasma membrane, plastid	26.04	28.71
VIT_12s0028g02360.t01	Wine grape	cytosol, mitochondrion, plasma membrane, plastid	25.0	28.5
VIT_06s0009g03380.t01	Wine grape	cytosol, peroxisome, plasma membrane	25.89	27.91
VIT_13s0067g03750.t01	Wine grape	cytosol, peroxisome, plasma membrane	29.14	26.37
VIT_16s0050g01620.t01	Wine grape	cytosol	22.93	25.96
VIT_01s0011g04670.t01	Wine grape	mitochondrion, plasma membrane	27.37	25.38
VIT_07s0031g02550.t01	Wine grape	cytosol, peroxisome, plasma membrane	23.82	25.35
VIT_08s0040g02840.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.51	25.27
VIT_17s0000g02200.t01	Wine grape	cytosol	26.33	25.25

Protein Annotations

EntrezGene:100255890	wikigene:100255890	MapMan:11.4.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM424873	ProteinID:CAN62390	ProteinID:CAN62390.1
ProteinID:CBI27088	ProteinID:CBI27088.3	UniProt:D7T9B7	EMBL:FN595752	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100255890	wikigene:LOC100255890
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF303	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00015C7A9E	ArrayExpress:VIT_01s0011g02730
EnsemblPlantsGene:VIT_01s0011g02730	EnsemblPlants:VIT_01s0011g02730.t01	RefSeq:XP_003631190	RefSeq:XP_003631190.1	RefSeq:XP_010648137.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:2429436..2433043

Molecular Weight (calculated)

75236.2 Da

IEP (calculated)

8.498

GRAVY (calculated)

0.007

Length

676 amino acids

Sequence
(BLAST)

001: MMPPEQETRI TGDPANVLGA NRIENVTIHA AEPASNVSPC LEDQTPDGQQ TTRPQFSILR ESLRPVTLKF EDVVYVIKLR STEGSCFGSP EPKQSRTVLN
101: GVSGIARPGE LLAMLGPSGS GKTTLLTALA GRLPGKVSGN ITYNGQPFSS SMKRKTGFVT QDDVLYPHLT VLETLTYAAL LRLPKKLTRE EKIEQAELII
201: VELGLTRCRN SVIGGPLLRG ISGGERKRVS IGQEMLVNPS LLLLDEPTSG LDSTTAHRIV ATLRGLAQGG RTVITTIHQP SSRLYRTFDK LVVLSEGCPI
301: YSGNAANVLE YFGTIGYLPG FSLLNPADFL LDLANGVAPD VRKDDQQDFH GRPDHHDDQN SIKQALISSY KKSLYHIMRA EIHRNSHGSD GSASGPLSSR
401: GCENQWTSSW WEQFKVLLRR GLQERKHESY SGLRIFQVMS VSILSGLLWW HSDTSHIQDQ VGLLFFFSIF WGFFPLFNAI FTFPQERPML IRERSSGMYR
501: LSSYYFARMA GDLPMELVLP TIFVTIAYWM GGLKPSLLTF VLTLLVILYN VLVSQGLGLA LGAIIMDVKQ GTALASVTML VFLLAGGYYI QHIPPFIAWL
601: KYISFSHYCY KLLVGVQYAE NEVYECGLRM HCKVWEFPAI KYLGIDHWAW DVAALTVMFV GYRALAYAAL RMGQHH

Best Arabidopsis Sequence Match ( AT3G25620.2 )
(BLAST)

001: MMPPNEQESS FPKTPSANRH ETSPVQENRF SSPSHVNPCL DDDNDHDGPS HQSRQSSVLR QSLRPIILKF EELTYSIKSQ TGKGSYWFGS QEPKPNRLVL
101: KCVSGIVKPG ELLAMLGPSG SGKTTLVTAL AGRLQGKLSG TVSYNGEPFT SSVKRKTGFV TQDDVLYPHL TVMETLTYTA LLRLPKELTR KEKLEQVEMV
201: VSDLGLTRCC NSVIGGGLIR GISGGERKRV SIGQEMLVNP SLLLLDEPTS GLDSTTAARI VATLRSLARG GRTVVTTIHQ PSSRLYRMFD KVLVLSEGCP
301: IYSGDSGRVM EYFGSIGYQP GSSFVNPADF VLDLANGITS DTKQYDQIET NGRLDRLEEQ NSVKQSLISS YKKNLYPPLK EEVSRTFPQD QTNARLRKKA
401: ITNRWPTSWW MQFSVLLKRG LKERSHESFS GLRIFMVMSV SLLSGLLWWH SRVAHLQDQV GLLFFFSIFW GFFPLFNAIF TFPQERPMLI KERSSGIYRL
501: SSYYIARTVG DLPMELILPT IFVTITYWMG GLKPSLTTFI MTLMIVLYNV LVAQGVGLAL GAILMDAKKA ATLSSVLMLV FLLAGGYYIQ HIPGFIAWLK
601: YVSFSHYCYK LLVGVQYTWD EVYECGSGLH CSVMDYEGIK NLRIGNMMWD VLALAVMLLL YRVLAYLALR NL

Arabidopsis Description

ABCG21ABC transporter G family member 21 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA72]
SUBAcon: [plasma membrane,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.